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Information for unigene UN46565
| FASTA Sequence |
| Unigene ID: UN46565 | Length: 716 |
SSR | | GGAGGGCTCAACTGAAGAGCCAAATGGAGAAGAAGAAGAAGAAGGAGATTCGATCAATGAGTGAGTTTCCAGATGAATTGCTGTTG
AAGATGCTAAATCTTCTTCCTACGAAAGACGCCGTAGCCACGAGCGTCTTATCAAAACGATGGATATCACTCTGGAAAGAGATGAA
CGCATTCAGGTACGACGGCAGCACAGTAGGTAGAGTGTACTGGGGATTCGCACTGTTCATCACCAAGCTCTTAAACCTAGATAGCT
TGGATCTCAAGATCAACCCCTACTCTACGAACAAATACATCAACTATCTGGTCAACATCGCGGTCGCTCGATCTCTCCGAAAGCTC
AGAGTCGAAATGGTTTGCGGCTCCTTTGAGTTCCCCAAAAGCTTGTTTATTCACTCGAATCTCGGGACGGTTATACTCGAGAAGGT
GAGCTTGGAGGATCCTCCGCTCGATGCTCGCTTTGTTTGCCTCAAAAGTCTCCACCTTTTGTCGGTTAGATTCTCGAGCGACGAGT
CTGTTGAGACGCTTTTGAGTAGGTGTCCTGTTCTTGAAGATTTGGTTGTGGGGAGAAGCTCTTTTACTAATGTGATGGTGTTTACT
ATCGATGTGCCTACGTTGAGGAGTTTGTGTGTTGATAACTCTGTTGGAGAGTCTCGCCCTGAAAGTGTTCATGGGTTTGTGATTAG
AACACCTTCTTTGAGATGGTTCAGTATT
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| GenBank top hits (Blast detail) | Score | e value |
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| XP_002894291 predicted protein [Arabidopsis lyrata subsp. lyrata] | 368 | 3e-033 |
| XP_002894621 F-box family protein [Arabidopsis lyrata subsp. lyrata] | 341 | 4e-030 |
| NP_175901 putative FBD-associated F-box protein [Arabidopsis thaliana] | 324 | 4e-028 |
| NP_200491 FBD and LRR domain-containing protein [Arabidopsis thaliana] | 298 | 4e-025 |
| ABK28762 unknown [Arabidopsis thaliana] | 298 | 4e-025 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9C7M1 Putative FBD-associated F-box protein At1g55030 | 324 | 2e-029 |
| Q501E9 F-box/FBD/LRR-repeat protein At3g51530 | 304 | 4e-027 |
| Q9LXJ6 F-box/FBD/LRR-repeat protein At3g52680 | 288 | 3e-025 |
| Q9C6I2 Putative FBD-associated F-box protein At1g50980 | 277 | 5e-024 |
| Q9FM94 FBD-associated F-box protein At5g56370 | 270 | 3e-023 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A0MFP8 Putative uncharacterized protein (Fragment) | 298 | 3e-025 |
| Q9FJT3 Emb|CAB62440.1 | 298 | 3e-025 |
| Q45GL3 Putative uncharacterized protein | 213 | 2e-015 |
| Q9LJF7 Putative uncharacterized protein | 213 | 2e-015 |
| Q9FJU2 Genomic DNA, chromosome 5, P1 clone:MIK19 | 175 | 5e-011 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT1G55030.1 F-box family protein | 324 | 2e-030 |
| AT5G56800.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G56560.1); Has 519 Blast hits to 504 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 515; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 298 | 2e-027 |
| AT3G52680.1 F-box family protein | 288 | 2e-026 |
| AT3G52680.2 F-box family protein | 288 | 2e-026 |
| AT1G50980.1 F-box family protein | 277 | 4e-025 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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