 |
Information for unigene UN46614
| FASTA Sequence |
| Unigene ID: UN46614 | Length: 747 |
SSR | | GGGAGAGAGAGAGAGAGAGAGAGGCAGAGCAAAAATGGCGATGGCAATGGCTCTTAGGAGACTTTCTTCTTCAGTTGACAAACCTA
TTCGTCCTCTTATCAGATCATCCTCGTGCTACATGTCTTCTTTGCCCAGTGAAGCAGTTGATGACAAGGAGAGATCTCGTGTAACT
TGGCCAAAACAGCTTAACGCATCTTTGGAGGAAGTTGATCCTGAGATTGCTGACATCATTGAGCATGAGAAAGCTAGACAGTGGAA
AGGGCTTGAACTCATTCCATCTGAGAATTTCACATCTGTCTCGGTGATGCAAGCTGTTGGCTCTGTGATGACTAACAAGTACAGTG
AAGGGTACCCTGGTGCTAGATACTATGGAGGAAATGAGTACATAGACATGGCGGAAACCTTGTGCCAAAGTAGCTGAATACTTTGA
CAAAGCTGTGAAGCTGGCTCTCAAAGTCAAATCTGAAGCTCAAGGAACGAAGCTGAAAGATTTTGTGTCAGCAATGGAATCGTCTT
CAGGCATCCAATCAGAGATAGCCAAGCTGCGCCACGACGTGGAGGAGTTCGCTAAGCAGTTCCCAACTATTGGGTTTGAGAAAGAA
ACCATGAAGTACAAGAACTGAATATGTCTTTATTATCCTACAAACAAGTCTTCTCTTTATTATTATCATCACATGCTTTGAACTTC
CATGTAATGTATAGATAATGCTACATGTACTCCATCTTATGATATATGCGAAACATACT
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_195506 glycine hydroxymethyltransferase [Arabidopsis thaliana] | 633 | 6e-064 |
| AAL06913 AT4g37930/F20D10_50 [Arabidopsis thaliana] | 633 | 6e-064 |
| XP_002866922 hypothetical protein ARALYDRAFT_490821 [Arabidopsis lyrata subsp. lyrata] | 633 | 6e-064 |
| BAJ33788 unnamed protein product [Thellungiella halophila] | 622 | 1e-062 |
| XP_002527226 serine hydroxymethyltransferase, putative [Ricinus communis] | 561 | 1e-055 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SZJ5 Serine hydroxymethyltransferase, mitochondrial | 633 | 3e-065 |
| P50433 Serine hydroxymethyltransferase, mitochondrial | 545 | 4e-055 |
| P34899 Serine hydroxymethyltransferase, mitochondrial | 530 | 2e-053 |
| P49357 Serine hydroxymethyltransferase 1, mitochondrial | 529 | 3e-053 |
| P49358 Serine hydroxymethyltransferase 2, mitochondrial | 502 | 4e-050 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9SMK7 Serine hydroxymethyltransferase | 561 | 9e-056 |
| C6ZJZ0 Serine hydroxymethyltransferase | 556 | 3e-055 |
| A9YWS0 Serine hydroxymethyltransferase | 544 | 8e-054 |
| B7FLU1 Putative uncharacterized protein | 544 | 8e-054 |
| A9PL10 Serine hydroxymethyltransferase | 520 | 5e-051 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G37930.1 SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1); glycine hydroxymethyltransferase/ poly(U) binding | 633 | 3e-066 |
| AT5G26780.1 SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding | 478 | 2e-048 |
| AT5G26780.3 SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding | 478 | 2e-048 |
| AT5G26780.2 SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding | 478 | 2e-048 |
| AT4G32520.1 SHM3 (SERINE HYDROXYMETHYLTRANSFERASE 3); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding | 274 | 1e-024 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
