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Information for unigene UN46640
| FASTA Sequence |
| Unigene ID: UN46640 | Length: 718 |
SSR | | GGACTCAACAAGAGAAGTAGAAAAGAAAAAGGGAACCGATTTCGAATTTTCCGCCGCCTCCGTTGTCTTCGATCTCTTTCTGCTCA
TCACTTCCTCTCCTCACAGCTAATCTTCTGATAGCAAGGTTCTTTACGGATCTTTAACTCTTTTGATTCCGGAAGATGCTTCCTCT
TTCGCTGCTCAAGACTGCTCAAGGGCATCCCATGCTTGTGGAGCTCAAGAATGGAGAAACCTACAATGGGCATTTAGTAAATTGTG
ATACGTGGATGAACATTCATCTCCGTGAAGTCATCTGCACATCAAAGGACGGAGACAGGTTTTGGAGGATGCCCGAATGTTACATC
CGCGGTAACACAATCAAGTACCTTCGAGTTCCAGATGAGGTAATTGATAAAGTACAGGAGGAGAAGACCCGCACAGATAGAAAACC
ACCGGGGGTTGGACGTGGAAGAGGACGTGGTATGGATGATGGAGGGGGCAGAGGCCGAGGCCGAGGAGCTCCAATGGCGAAGATGA
CTGGCAACAGAGGAGCAGGTCGTGGCCGTGGTTGATGCCAACAACTTATATAAAAAGACTATCCAATTTCTGCTGCTGCTGCTGCT
GCACTCGCATTTTAAGAGTTCTCTTGTGTTTTTTTTTTGTCATCTTTGAGCTGAATATATAAAACTAAATCACAATGAGCTGAATA
TAAAAAATTCGAAGCTGTTTTAAGCTAAGC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| AAM65462 glycine rich protein-like [Arabidopsis thaliana] | 675 | 7e-069 |
| NP_198124 U6 snRNA-associated Sm-like protein LSm4 [Arabidopsis thaliana] | 674 | 9e-069 |
| AAM13039 unknown protein [Arabidopsis thaliana] | 670 | 3e-068 |
| XP_002874352 hypothetical protein ARALYDRAFT_326933 [Arabidopsis lyrata subsp. lyrata] | 638 | 1e-064 |
| XP_002523061 Small nuclear ribonucleoprotein SM D3, putative [Ricinus communis] | 577 | 2e-057 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LGE6 Probable U6 snRNA-associated Sm-like protein LSm4 | 560 | 7e-057 |
| Q9ZRU9 Probable U6 snRNA-associated Sm-like protein LSm4 | 545 | 4e-055 |
| Q43582 Probable U6 snRNA-associated Sm-like protein LSm4 | 538 | 3e-054 |
| Q9QXA5 U6 snRNA-associated Sm-like protein LSm4 | 444 | 2e-043 |
| Q3ZBK6 U6 snRNA-associated Sm-like protein LSm4 | 437 | 1e-042 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8LAC6 Glycine rich protein-like | 675 | 5e-069 |
| Q8RWJ9 Putative uncharacterized protein At5g27720 | 670 | 2e-068 |
| B9SAP2 Small nuclear ribonucleoprotein SM D3, putative | 577 | 1e-057 |
| B9GS94 Predicted protein | 572 | 4e-057 |
| B9I9S7 Predicted protein | 569 | 1e-056 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G27720.1 emb1644 (embryo defective 1644) | 675 | 3e-071 |
| AT1G20580.1 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative | 174 | 4e-013 |
| AT3G07590.1 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative | 145 | 9e-010 |
| AT4G25630.1 FIB2 (FIBRILLARIN 2); snoRNA binding | 111 | 8e-006 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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