 |
Information for unigene UN46793
| FASTA Sequence |
| Unigene ID: UN46793 | Length: 1156 |
SSR | | GGTGCAGTAACGGTAACGGAGGTGAACCGGGAACAGACCGTGCCATGTCTCTATGGGCACCGATCTTGCTTGGAATGATGAGTACT
CCTCAGAGAAGAAGAAGGTTTATGAGAGCAGATTTTGATGAAGAAGACAATGATGCTGCTGATGAAAACGATGTGTATCATCATCA
TAGAGCTAGAAGACACGGTGGAGAGATTGATTTGGACAGAGAGTTTGAATCTCTCTTGAGGAGAAGACGAAGAAGCTCAGGGAATA
TATTGTAGCTGCTTCAAGGGATACGCGCAGGTATTGCTTCCGAGTATGACACATCTGATGATCGAGAGAGCAACAACAGAGTTATA
ATGATCAATCCGTTGAACCAGTCCCTCGTCGTTCAAGGACAAGCTCAGAGTAGCCATCATCATCCTGCACTGACTTCGCTTGGAGA
TTACTTCATCGGACCTGGTTTGGATCTTTTGCTTCAGCATTTGGCTGAGAACGATCCTAACAGGCAAGGGACTCCGCCTGCTCGTA
AAGAAGTGGTAGATGCTTTGCCGACGGTTAAGATAACGGAACCGTCGCTGCAGTGCTCGGTTTGTTTGGATGAGTTCGAGGAAGAA
GCTAAAGAGATGCCGTGTAAGCATAAGTTTCATGTTAAGCGTATTGTTCCGTGGCTTGAGCTTCATAGCTCTTGTCCCGTGTGTCG
GTTCGAGCTTCCTTCTGCGAATGGTGGTGAGAGTAAGGTTGAATCAAGAAGTAGGAGTCTTCCGGAGAGTAGTAACGGAAACGTTG
TTGAGAATGTGGGGAATGAGGAAAGAGGAAGGGAGGATGATGCGAGGAGTGGTAATGGAAGAAGGTTTTCGTTTTCATGGCCGTTT
AGTGGATTGTTCTCATCTTCTTCTTCTTCTTCTTCATCCTCTGGATCTCAATCTGGTTCTCGCTGATCGGAAAGAAGAACAGAACT
TCTTGAACTTGTTTTGTTCTCCTCTGCTTTTATGTACATACAAATGATGTTCTTTCACTCTCAGATTGTTTCCAAAAAAATATCCA
TGGAGGTGTTATCTGTTCTTATTTGTTACAATCTTCTTGTAATTGTTGCTGTACAGAGATGGTCAAGTTTTATTTTGTGTGTTTGT
TTCAGTGTTTTTGTTTCTATACTTGCTTTATGAATATA
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002864451 zinc finger family protein [Arabidopsis lyrata subsp. lyrata] | 1148 | 2e-123 |
| NP_200445 RING/U-box domain-containing protein [Arabidopsis thaliana] | 1020 | 2e-108 |
| XP_002285765 PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] | 796 | 2e-082 |
| XP_002867566 zinc finger family protein [Arabidopsis lyrata subsp. lyrata] | 776 | 3e-080 |
| NP_564693 RING/U-box domain-containing protein [Arabidopsis thaliana] | 642 | 1e-064 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9Y4L5 E3 ubiquitin-protein ligase RNF115 | 222 | 2e-017 |
| Q9D0C1 E3 ubiquitin-protein ligase RNF115 | 215 | 2e-016 |
| Q9BV68 RING finger protein 126 | 214 | 2e-016 |
| Q0II22 RING finger protein 126 | 209 | 8e-016 |
| Q91YL2 RING finger protein 126 | 208 | 1e-015 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FM98 Genomic DNA, chromosome 5, P1 clone: MCD7 | 1020 | 1e-108 |
| O65594 Putative uncharacterized protein AT4g26400 | 809 | 3e-084 |
| Q8L5Z3 AT4G26400 protein | 809 | 3e-084 |
| Q9ZVU8 At1g55530/T5A14_7 | 642 | 8e-065 |
| B9GXX2 Predicted protein (Fragment) | 577 | 3e-057 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G56340.1 zinc finger (C3HC4-type RING finger) family protein | 1020 | 6e-111 |
| AT4G26400.2 zinc finger (C3HC4-type RING finger) family protein | 812 | 8e-087 |
| AT4G26400.1 zinc finger (C3HC4-type RING finger) family protein | 812 | 8e-087 |
| AT1G55530.1 zinc finger (C3HC4-type RING finger) family protein | 642 | 4e-067 |
| AT3G13430.1 zinc finger (C3HC4-type RING finger) family protein | 527 | 9e-054 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
