Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN46801

FASTA Sequence
Unigene ID: UN46801Length: 806 SSR 
GGATTCTCGTCTTCCTCTCGCTGCTACCGTCTCTCACGATGCCGAGGTATTACTGTGACCATTGTGACACTTATCTCACCCACGAC
TCCCCATCCGTGAGGAAGCAGCACAATTCTGGTTACAAACACAAGGCGAATGTAAGAACATACTATCAGCAATTTGAGGAACAACA
AACCCAAAGTCTGATTGATCAGAGAATTAAAGAGCATCTTGGCCAAACTGCAGCGTACAATCAGGTTGGTGCTGTATTTAATCAGC
ATATGCTCGCTAGACCTCGCCTTCCTATGATGCCTATGCCTATGGGGATGCGACCTCCTATTCTGCCTAGACCCATGATGCCTGGT
CAAGGTTACATGCCTCCTCCAGGAGTACCACAGATGATGGCACCACCTGGCGGTCCTCTACCACCACCACCTCCACAAAATGGTAT
TTTTAGGCCACCAGGATTGGCTCCAATACCAGGTCAAGGTGGTGCGCCACCTCCCAATTACAGTGGACTTCCTCCTCCTCCTCCTT
ATCATACAAATCCAGCTGCTGCTCCACCAAGTGTTGGCTTCAACAATCCGAACCCTGGTGCTGAATCTCCTGAAACCAATTAGTAG
AGTTTAGGTTTGATGAGTTATTCTTCTCCTGCCAAAAAAAATTTTGAGGACTCATTTTTTAACAGAGTTTTTTTTTTTACCTTTTT
TAATGTAATCCATGCGAAGAGGTTTAGAAGTATTGTATGTGAATTGCATAATTTATGTACTAGATTTTTATTTCCATAGAATGATG
AAAGGTCTCTTATAACAAACAGTCAGGTTTAT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002874880 hypothetical protein ARALYDRAFT_911890 [Arabidopsis lyrata subsp. lyrata]8829e-093
NP_567250 C2H2 and C2HC zinc finger-containing protein [Arabidopsis thaliana]8712e-091
AAO44073 At4g03120 [Arabidopsis thaliana]8666e-091
XP_002453652 hypothetical protein SORBIDRAFT_04g009880 [Sorghum bicolor]5271e-051
AAD14440 putative C-type U1 snRNP [Arabidopsis thaliana]5082e-049

Swiss-Prot top hits (Blast detail)Scoree value
P09234 U1 small nuclear ribonucleoprotein C2831e-024
Q62241 U1 small nuclear ribonucleoprotein C2812e-024
Q32PA0 U1 small nuclear ribonucleoprotein C2793e-024
Q03369 U1 small nuclear ribonucleoprotein C2732e-023
Q54YA5 U1 small nuclear ribonucleoprotein C2391e-019

TrEMBL top hits (Blast detail)Scoree value
Q56XE4 Putative C-type U1 snRNP8711e-091
Q84VV2 At4g031208664e-091
C5XZK6 Putative uncharacterized protein Sb04g0098805279e-052
Q9ZR19 Putative C-type U1 snRNP5081e-049
B9S3X9 U1 small nuclear ribonucleoprotein C, putative4982e-048

Arabidopsis top hits (Blast detail)Scoree value
AT4G03120.1 proline-rich family protein8717e-094
AT4G13340.1 leucine-rich repeat family protein / extensin family protein1574e-011
AT4G20440.1 smB (small nuclear ribonucleoprotein associated protein B)1395e-009
AT4G20440.2 smB (small nuclear ribonucleoprotein associated protein B)1395e-009
AT4G20440.3 smB (small nuclear ribonucleoprotein associated protein B)1395e-009

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
112  100%

Unigene MembersMember information