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Information for unigene UN46952

FASTA Sequence
Unigene ID: UN46952Length: 925 SSR 
GTCTATACGCTGAGATCTCTGACTTTGGTCTTGCTAAGCTCGACGAAGAAGAGAACACACATATCAGCACAAGGATTGCGGGAACA
ATAGGTTACGTGGCTCCAGAGTATGCGATGAGAGTCTACTTAACAGACAAAGCTGACGTCTACAGCTTCGGTGTTGTCTGTTTAGA
GATTGTAAGCGGGAAGAGCAACACAAACTACAGACCAAAGGAAGAGTTTGTGTACCTTCTTGATTGGGCCTATGTCTTGCAAGAAC
AAGAGAACCTCCTGGAGCTTGTGGACATGGATCTCGATACAAACTTCTCCAAGAAGGAAGCAAAGAGGATGCTGAACATCGCTCTG
CTCTGCACAAACCCATCTCCGACGCTAAGACCACCAATGTCATCCGTTGTGAGTATGTTAGAAGGGAAAAGCAAAGTGGAACCACC
TTTGGTGAAACGTGAGGCTGATCCAACAGGTGCGGCTGCTATGAGGTTTAGGGCCTTTGAGCTTTTGTCACAAGACAGCGAGTCAC
AGACTTCTACCTTTGAGAGAGACAGAGAAAAGAAAAGCTCGTCCTCGATGGATGTTCCTTGGGTTGACTCTTCGTGCTCTGCGCCA
GGCAAAGATGTTGACATGAAACGAGAAGAAGAAGAAGAAGAAAAACGTTCATCATCATCGTCAAGGAAGCTTTTATATGATCTTAC
AGAGGTGAAGGTTGAGTAAAGAAGTGTATATCTTCAGTCAAGAGCAAAGATGTTACCTTGCAAACAAGAAGAAAGTTCATTATCTT
TGTTCATGGAGACTTTTGGATGAAAGAAAAGCACTGTATAGATTCTTTTGGTATTTTGTTTAATCAAGATTTCAAAATTCACTTGC
CACTAGAGAGATCTTTTTTTGTTTTGTTAATGCTATTGTGTAAATTCTCTTTTGGATTACAGAGT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_175748 Leucine-rich repeat transmembrane protein kinase [Arabidopsis thaliana]9501e-100
AAF78446 Contains similarity to receptor-like serine/threonine kinase from Arabidopsis thaliana gb|AF024648 and contains multiple leucine rich PF|00560 repeats and protein kinase PF|00069 domain. ESTs gb|T04455, gb|N38129 come from this gene9501e-100
NP_001117479 Leucine-rich repeat transmembrane protein kinase [Arabidopsis thaliana]9501e-100
C0LGG8 RecName: Full=Probable LRR receptor-like serine/threonine-protein kinase At1g53430; Flags: Precursor9501e-100
XP_002891752 leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]9456e-100

Swiss-Prot top hits (Blast detail)Scoree value
C0LGG8 Probable LRR receptor-like serine/threonine-protein kinase At1g534309507e-102
C0LGG9 Probable LRR receptor-like serine/threonine-protein kinase At1g534409391e-100
C0LGE0 Probable LRR receptor-like serine/threonine-protein kinase At1g076505393e-054
C0LGG7 Probable LRR receptor-like serine/threonine-protein kinase At1g534204632e-045
C0LGH2 Probable LRR receptor-like serine/threonine-protein kinase At1g561304131e-039

TrEMBL top hits (Blast detail)Scoree value
A5C3D9 Putative uncharacterized protein7483e-077
Q8VWW7 Putative receptor-like protein kinase RLPK1 (Fragment)7205e-074
B9NBX2 Predicted protein (Fragment)7171e-073
B9NBX5 Predicted protein7161e-073
A5BSQ4 Putative uncharacterized protein7115e-073

Arabidopsis top hits (Blast detail)Scoree value
AT1G53430.1 leucine-rich repeat family protein / protein kinase family protein9533e-103
AT1G53430.2 leucine-rich repeat family protein / protein kinase family protein9533e-103
AT1G53440.1 leucine-rich repeat family protein / protein kinase family protein9409e-102
AT1G07650.1 leucine-rich repeat transmembrane protein kinase, putative5393e-055
AT3G14840.2 leucine-rich repeat family protein / protein kinase family protein4936e-050

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
92  100%

Unigene MembersMember information