 |
Information for unigene UN47048
| FASTA Sequence |
| Unigene ID: UN47048 | Length: 931 |
SSR | | GGGGATTCACTCTAACACTTGTGCCCGCTCTCTTCTTTGTCTTCTTCCCTCCTTCCTCCGTCCTCAAATTTGCTTCGTTCACTTAC
AGATTCTCTCACCAGACACAAACTCCAGATTCACTCCGACAATGGAAACATTCCGAACATTCCATCTCTTCTTTTTCTTCTCTCAC
TTTATCTTCTTGACGACACACACTACGCTTACGTCCGCAAACTCTCAGATCGTTGACTGTACAATGTGCACGTCTTGTGACAATCC
TTGTCAGCCAAATCCCTCTCCTCCACCACCGACTCCATCTCCGCCACCTCCAACCACGACCACCGCCTGTCCTCCGCCTCCTAGCT
CTGGAAGTGGTGGTGGTGGTGGTCCTTACTACTACTACCCACCTCCTTCTCAGTCTAGCTCAAACCGTCCACCACCGTCTTCCTCG
GGCGATGGTGGCTACGTTTATCCACCGCCTAAAAGTGGAGGAAACTACCCTTTTACGCCGCCGCCAAACCCGATCGTTCCTTACTT
TCCGTTTTACTACTACAACCCTCCGCCGCAATCTGTTGTGTTGTCCGGATCCGTTGCGAAAACAATTTTCTCTTACGGGTTTTCAT
TTGCGTTAGTTTTTGCTCTTTGTTTCAGTACGTTGCTTCTAAATAATACAGGTTAAAGAAGATGATAGCTAGAGGTTACTTGTAAC
AACAAGAAAAATCCTCATCTCTTTGCAGAGAAGATGACTTATGCATGAGAGATCTTTACGCTACAGATTCAAAACGGTGAATGTTG
GTTCTTCATTTTCTCTTTTCTTTTTCTTTACTTGTCTTTGCTTGTATAAGTAAAAATAATTCCATATCTTTTAACAATCTTATGAA
TGTAGTTTCTTCCCCTTTTTCATAATATTAAAAATAAATAAATGGGGGTTGCCTCATTTTGGGTTTTAGTT
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002870180 predicted protein [Arabidopsis lyrata subsp. lyrata] | 700 | 1e-071 |
| NP_193349 proline-rich family protein [Arabidopsis thaliana] | 661 | 5e-067 |
| NP_568708 hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] | 436 | 6e-041 |
| XP_002865724 hypothetical protein ARALYDRAFT_494989 [Arabidopsis lyrata subsp. lyrata] | 433 | 1e-040 |
| XP_002519176 nutrient reservoir, putative [Ricinus communis] | 391 | 1e-035 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O53426 Proline-rich antigen homolog | 178 | 2e-012 |
| O65375 Leucine-rich repeat extensin-like protein 1 | 174 | 6e-012 |
| Q9LUI1 Leucine-rich repeat extensin-like protein 6 | 172 | 1e-011 |
| Q6BSP4 Branchpoint-bridging protein | 142 | 3e-008 |
| Q84ZL0 Formin-like protein 5 | 139 | 7e-008 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G16140.1 proline-rich family protein | 677 | 3e-071 |
| AT5G49280.1 hydroxyproline-rich glycoprotein family protein | 436 | 2e-043 |
| AT3G06750.1 hydroxyproline-rich glycoprotein family protein | 318 | 1e-029 |
| AT3G22800.1 leucine-rich repeat family protein / extensin family protein | 179 | 2e-013 |
| AT1G70985.1 hydroxyproline-rich glycoprotein family protein | 177 | 3e-013 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
