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Information for unigene UN47085

FASTA Sequence
Unigene ID: UN47085Length: 752 SSR 
GGGTTCCCTTCGAATCTAAAACCCATTAGATCTCTCTCTCTCAATCTGATCGTCGTTCAATCAATGACGTACAGCGACGTCGCCGA
TAAGCCGGTACCTGAGCTGAAACTAAGGATGGAGGATTCCGGAAACGGAGATTATGTGAAATTGAGAGGAGGATCGGATGAAGAAG
AACAAGGATCTCCCGCGGAATCATCGTTAGGGTCTGTCTGGTTCTGGGTTAAATCGATCGCCCTCGTCGCTTGTGTTGGTGTATTA
GCATTTGTAATTATTAAATGGGTTGCTCCGTTTCTGATCGAAAAGGAACTGATTCCGTTTATAAATTGGGTGAGGAGCACATTCAG
CATCCCGGTGCTAGGTCTTCTCCTCTTTGCCTCGGTTGCTTCGTTCCCAAGCATTCTTCTTCCTTCCTCTCCTTCCATGTGGATGG
CTGGTCTTACCTTTGGTTATGGCAAAGGCTTTCTGTTGATTCTGTCAGCAGCATCAATCGGTGTTACTCTTCCTTTCTTGATCGGA
CATCTCTTCCTCCACAAGATGTAAGAATGGTTGTAGCAGTACCCGAAAGAAGCAGCTATACTTCGAGCCGCGGGTGAAGGAACCTG
GTTTCATCAGTTTCAAGCAGTCACGTTAATCCGTGTCTCGCCATTCCCTTACATGATTTACAACTACTGCGCATTAGCCGCTGGAG
TTCACTACAGTCCTTACATCTTAGCTCTCTTGTCGGATGGTCCCTGAGATATTCGTCTCATCTA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002889935 hypothetical protein ARALYDRAFT_471395 [Arabidopsis lyrata subsp. lyrata]9581e-101
NP_172707 SNARE associated Golgi protein family [Arabidopsis thaliana]9544e-101
AAF79638 F5O11.19 [Arabidopsis thaliana]6731e-068
XP_002274997 PREDICTED: hypothetical protein [Vitis vinifera]6481e-065
CBI34802 unnamed protein product [Vitis vinifera]6481e-065

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q6NQK3 At1g124509542e-101
Q9LNA0 F5O11.196739e-069
B9GVU8 Predicted protein6452e-065
B9RBV9 Putative uncharacterized protein6424e-065
B9GKS8 Predicted protein6272e-063

Arabidopsis top hits (Blast detail)Scoree value
AT1G12450.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22850.1); Has 1233 Blast hits to 1230 proteins in 347 species: Archae - 2; Bacteria - 557; Metazoa - 104; Fungi - 72; Plants - 132; Viruses - 0; Other Eukaryotes - 366 (source: NCBI BLink).9542e-103
AT4G22850.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12000.1); Has 1331 Blast hits to 1328 proteins in 349 species: Archae - 4; Bacteria - 600; Metazoa - 103; Fungi - 64; Plants - 162; Viruses - 0; Other Eukaryotes - 398 (source: NCBI BLink).6216e-065
AT4G22850.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12000.1).6216e-065
AT4G12000.1 INVOLVED IN: response to oxidative stress; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22850.1); Has 1153 Blast hits to 1150 proteins in 277 species: Archae - 2; Bacteria - 485; Metazoa - 104; Fungi - 24; Plants - 140; Viruses - 0; Other Eukaryotes - 398 (source: NCBI BLink).5365e-055
AT2G02370.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12450.1); Has 1745 Blast hits to 1745 proteins in 446 species: Archae - 2; Bacteria - 792; Metazoa - 108; Fungi - 97; Plants - 119; Viruses - 0; Other Eukaryotes - 627 (source: NCBI BLink).4461e-044

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
101  50%
 
111  50%

Unigene MembersMember information