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Information for unigene UN47115
| FASTA Sequence |
| Unigene ID: UN47115 | Length: 695 |
SSR | | GGCATTTGAGCGTTTCCCTGGATATGCTGCTTAAGCTGGTTAGAATGTACGGATCACCAATTTACTCATCGCTGTCAGCTCCAGCA
TCTGTTGGTGTAGATATCGAAGCCGAGCAAAGAATCGAGCGCTACAGTCGTTGCTTTGTGGAGCTAGAGAAAGCTAAAGCCTGCCT
TCCCTCGCTGTCAAGAAGAGGAGGTTTGGTGGCCAAGTCTGTGATTGAACTCAACTTAGCATTTCAGGAAGTTTCATCATAATCAA
TTCCGAATCCTAGAAAAGCACAGAGCAAAGCCCGTCTTCTTAGTGGCATCTTCCCAATCCTGTGCTTGTTTTCTTTTTTTAATGTG
GATTTGGTTCCAAAGGGAGTCTAACAAAAAGAAAAAAAACTAAAGCTGATGATGATACGCTTACTAAGTTAACCAAAAGAGTTTGG
AATGCTATAATCACTCCCGAGTTAACTGCATCTGTGACCACTCCATGACTTTTTTATCATCCAGCTACTAATCTTTGTCTTTGCTT
TGGGGGAAGTGTATTGCTCTAACTGCGGTGTGTGTAGAAACAGAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCATATGGGCT
GTGTATTGCTCTCCTAGCTAATATTACATGAATACTAAGAATTTTAGTGTTCTTTTCTCAACTCTGCTAGAGAGTATTTTCATGTT
TTCTTGG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_851064 Katanin p80 WD40 repeat-containing subunit B1-1 [Arabidopsis thaliana] | 388 | 1e-035 |
| XP_002874130 transducin family protein [Arabidopsis lyrata subsp. lyrata] | 384 | 4e-035 |
| NP_197734 Katanin p80 WD40 repeat-containing subunit B1-1 [Arabidopsis thaliana] | 371 | 1e-033 |
| BAE98997 katanin p80 subunit - like protein [Arabidopsis thaliana] | 338 | 8e-030 |
| NP_568194 katanin p80 subunit-like protein [Arabidopsis thaliana] | 338 | 8e-030 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8H0T9 Katanin p80 WD40 repeat-containing subunit B1 homolog 1 | 388 | 6e-037 |
| TrEMBL top hits (Blast detail) | Score | e value |
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| Q0WV51 Katanin p80 subunit-like protein | 338 | 6e-030 |
| B9HK05 Predicted protein | 291 | 2e-024 |
| B9HUZ5 Predicted protein | 279 | 4e-023 |
| B9RJ00 Katanin P80 subunit, putative | 275 | 1e-022 |
| Q9FT96 Katanin p80 subunit-like protein | 264 | 2e-021 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G23430.1 transducin family protein / WD-40 repeat family protein | 389 | 4e-038 |
| AT5G23430.2 transducin family protein / WD-40 repeat family protein | 372 | 4e-036 |
| AT5G08390.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G23430.1); Has 84267 Blast hits to 30722 proteins in 748 species: Archae - 68; Bacteria - 7813; Metazoa - 39755; Fungi - 16342; Plants - 8110; Viruses - 6; Other Eukaryotes - 12173 (source: NCBI BLink). | 339 | 3e-032 |
| AT1G61210.1 WD-40 repeat family protein / katanin p80 subunit, putative | 190 | 5e-015 |
| AT1G11160.1 nucleotide binding | 189 | 7e-015 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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