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Information for unigene UN47162
| FASTA Sequence |
| Unigene ID: UN47162 | Length: 1182 |
SSR | | GGGAGTTTGATAGAGCGCACGATAAACAACACAGCAGCGCAAAAGCAGAGAGGGGACGAAAAAGAAGGTTTAGATAAAGCAACAAC
TCTCTCTCTCTCTCTCTCTCTCAGTTTGATTTTGAGATTTCGAACTTCCCTCTTCCTGATTCAATCTCGAGAAAGGTGGCATAGAT
GCAGAGTCTTCGGTTTTTGGAATTGTGATAAAGAACACACAAAACAAAAAAAAACATAATGGGAGGCTGCTGTTGTTGTTCTTCTT
CACGAAGAGCCGATGTTGATAATGGACCTCCCTACTATTACTATCCGAGAGCAACAGAAGAGCGTGTTCCTTTATCTTCCGCTCTT
AACAGGACTTCCTCTACAATCTCCTCTGGTGTTGTTGTGGTTGACACAAACTTAGAGACTTCATCTCCTGATGCTTATATACCACC
ACCACTCCCTACTCCTTTCGATGTGTCTATAGGTGTTCCTCAAACTCCAGAAATCCGTGAAGAGTCTGCTTGTGTTGATATAAGAG
AAGTCTCAGTTGAAGCCGCTAATACCGAGTCAGCTCAAGAAACAGTCGATGGTATCACTCTAGGGGTTCCAACTACAACATGCCCG
TGTAAAGAAACAGAAAGCAAACTACAGGCAGAGATTGATCTTGAATCTACTGAAGATATAGACCCCAAGAAGCTATCGAAAGACGT
CTTTGTACCAATAGAGGAAGAGGAGGATTGTCCCATATGCTTGGAAGAATATGATATGGATAACCCGAAACTTCTAGCCAAATGTG
AGCACCATTTTCACCTGGCATGCATTCTAGAATGGATGGAGAGAAGTGAAACTTGCCCCGTCTGCAACAAGGAAATGGTGTTTGAC
TCTCCCCTCGACTAGAAACCTGCAAGTACCCACAGCTTAGAAGACTCGTTTCGGCTCTGAATCCCAAAAAAAAAACGAAGAAACAT
AAAAGAAAAGAAAAGAAAGATGGTAAGAAAATACACAACAGTAACGTTCTTGATTCACAATTTGCAAATTACACGTTAGTGTTGAT
ATATATAAATATACGTATGCTTGTACAGACGTTTGAAGTCGTCTACAAAGACTATTAAAGATAAGAATTAGGGGTTTATTATTATG
CTTTAAGATTCGCCTCTGTGAATATACTCAAAAACAAACGAAGTTCTTGTTCTTGTATATGTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_568590 RING/U-box domain-containing protein [Arabidopsis thaliana] | 990 | 5e-105 |
| XP_002868602 zinc finger family protein [Arabidopsis lyrata subsp. lyrata] | 989 | 7e-105 |
| BAB08507 unnamed protein product [Arabidopsis thaliana] | 951 | 2e-100 |
| ADK63400 C3HC4 type zinc finger protein [Brassica rapa] | 887 | 4e-093 |
| ACU21148 unknown [Glycine max] | 568 | 4e-056 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8LE94 E3 ubiquitin-protein ligase At3g02290 | 228 | 5e-018 |
| Q4TU14 E3 ubiquitin-protein ligase RHF1A | 147 | 1e-008 |
| Q9ZT42 E3 ubiquitin-protein ligase RHF2A | 145 | 2e-008 |
| Q9Y4L5 E3 ubiquitin-protein ligase RNF115 | 141 | 6e-008 |
| Q9D0C1 E3 ubiquitin-protein ligase RNF115 | 141 | 6e-008 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q94AB7 AT5g41350/MYC6_6 | 990 | 3e-105 |
| Q9FN65 Genomic DNA, chromosome 5, P1 clone:MYC6 | 951 | 1e-100 |
| C6TH46 Putative uncharacterized protein | 568 | 3e-056 |
| B9GKF5 Predicted protein | 558 | 4e-055 |
| B9RCE8 Protein binding protein, putative | 557 | 6e-055 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G41350.1 zinc finger (C3HC4-type RING finger) family protein | 991 | 1e-107 |
| AT4G00335.1 RHB1A; protein binding / zinc ion binding | 243 | 8e-021 |
| AT4G00335.2 RHB1A; protein binding / zinc ion binding | 243 | 8e-021 |
| AT3G02290.1 zinc finger (C3HC4-type RING finger) family protein | 228 | 4e-019 |
| AT4G23450.1 zinc finger (C3HC4-type RING finger) family protein | 228 | 4e-019 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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