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Information for unigene UN47187
| FASTA Sequence |
| Unigene ID: UN47187 | Length: 1299 |
SSR | | AATCGAGTGGGAGTCCGAAGACGCAGATTCCGATGACACAGAAGAAGAAGAAGAGTATACCTCGCCGTCGCAACCACCGTCTTCGG
CGAACTTCGATAAAGATCGACACTTGGTGTATTTGCAGATGATGTACGAGCTGCTTCCGTACCATTACCAATCGCAGGAGATCAAT
CGACTTACCCTCGCTCACTTTATAATCTCCGGACTTCACTTTCTCGGCGCAACAGACCGTGTTGACAAAGATGTAGTTGCGAACTG
GGTTCTGTCCTTCCAGGCCTTCCCTAGGAACAGAGCTTCACTCAAAGAAGGTGAATTCTACGGGTTCTACGGTTCAAGGAGCTCTC
AGTTTCCTATAGATGTTAATGGGTCTGTGCTGCAGGATCTAACTCATAACAACAGTCACCTGGCAAGTACATACTGTGCCTTGGCT
ATTCTTAAGGTGATTGGGCATGATCTCTCGACCATTGACTCTGAATCACTGTTGTTATCCATGAATAATCTTCAGCAAGATGATGG
AAGCTTCATGCCTATCCATACTGGAGGCGAGACGGATCTTCGGTTTGTATATTGTGCTGCTGCAATCTCTGACATGCTGGGTGATT
GGAGTGGAATGGACAAGGAGAAGGCTAAGAATTACATATTAAATTGTCAGTCATATGATGGTGGCTTTGGGTTGATCCCTGGTTCT
GAATCTCATGGTGGTGGTACTTACTGTGCTATTGCATCCCTTAGATTGATGGGGTTTATTGGAGCTGATCTGCTGTCAAATGATCC
ATCCAGTTCAATTCTAGACCCTTCATTGCTTCTCAACTGGAGCCTACAGAGACAAGCCAGTGATGGTGGTTTTTCAGGTAGGACTA
ACAAACAGAGCGACACATGCTATGCATTTTGGATTGGAGCTGTCCTTAAACTCATAGGAGGCGATGCATTCATTGACAAAATTGCT
TTCCGCCAATTTTTACTGAGCTGCCAGTCCAAGTATGGTGGGTTCAGTAAATTTCCTGGAGCGTTACCAGATCTGTATCATTCATA
CTATGGCTACACTGCGTTTAGCTTCTTGGAGGAACCGGGATTGAGTCCTCTATGCCCTGAGCTAGGGTTACCTCTTCTTACATCCT
TGGGAATCTGATTCCCCCTCAAAGTCCCCCACATTCTTTTTTATCAACCCAACTGTAACTTTTATTTGGTATTTGATTATTGGTTT
ATGTATTTTAATTGATTTAGAAATCGAAACTAAATCCAGAATTCTAGTGTCATATATTTACCTATGATTTTATAAATTTTAATTTG
ATATTTCAT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_181487 geranylgeranyl transferase type-1 subunit beta [Arabidopsis thaliana] | 1642 | 1e-180 |
| AAG40865 geranylgeranyltransferase beta subunit [Arabidopsis thaliana] | 1527 | 3e-167 |
| XP_002879805 geranylgeranyltransferase-I beta subunit [Arabidopsis lyrata subsp. lyrata] | 1520 | 2e-166 |
| XP_002278609 PREDICTED: hypothetical protein [Vitis vinifera] | 1296 | 2e-140 |
| XP_002532295 geranylgeranyl transferase type I beta subunit, putative [Ricinus communis] | 1293 | 4e-140 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q55DA3 Geranylgeranyl transferase type-1 subunit beta | 499 | 2e-049 |
| Q5EAD5 Geranylgeranyl transferase type-1 subunit beta | 446 | 3e-043 |
| P53609 Geranylgeranyl transferase type-1 subunit beta | 441 | 1e-042 |
| P53610 Geranylgeranyl transferase type-1 subunit beta | 441 | 1e-042 |
| Q8BUY9 Geranylgeranyl transferase type-1 subunit beta | 438 | 3e-042 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O80642 At2g39550 | 1642 | 1e-180 |
| Q9FPP6 Geranylgeranyltransferase beta subunit | 1527 | 2e-167 |
| B9T226 Geranylgeranyl transferase type I beta subunit, putative | 1293 | 3e-140 |
| B9HMG6 Predicted protein | 1262 | 1e-136 |
| Q6EMC1 Geranylgeranyltransferase type I beta subunit | 1191 | 2e-128 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G39550.1 PGGT-I; CAAX-protein geranylgeranyltransferase/ protein heterodimerization | 1643 | 4e-183 |
| AT5G40280.1 ERA1 (ENHANCED RESPONSE TO ABA 1); farnesyltranstransferase/ protein farnesyltransferase | 202 | 5e-016 |
| AT3G12070.1 geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative | 179 | 2e-013 |
| AT3G12070.2 geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative | 179 | 2e-013 |
| AT5G12210.1 geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative | 175 | 7e-013 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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