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Information for unigene UN47199
| FASTA Sequence |
| Unigene ID: UN47199 | Length: 1288 |
SSR | | GGGAGACACAAAGAAAATATCATCCAAGAGCTTCTTCTAGGGCTTCGACGCGACAACGGCTGCCAACTACTTCAGTTTCATAACTG
CACAGGAATCATGAAGCCAGTCTTCTGTGGGAACTTTGAGTATGATGCACGTGAGGGCGATCTTGAAAGACTATTCAGGAAATACG
GAAGGGTCGAGAGGGTTGATATGAAAGCTGGGTTTGCTTTCGTGTACATGGAAGACGAGAGGGATGCTGAGGATGCAATCCGAGCC
CTTGACCGCATTGAATTTGGGCGCAAGGGACGCAGACTCCGTGTTGAGTGGACAAAGGGTGAGCGTGGAGGCGACAGAAGATCTGG
TGGTGGTGGTGGTTCAAGGAGATCTTCATCCTTGAGGCCTTCCAAGACTCTGTTTGTGATCAACTTTGATGCGGACAATACTAGGA
CTCGGGATCTAGAGAGACACTTTGAACCGTATGGCAAAATTGTAAACGTTAGGATCAGGAGGAACTTTGCATTTATCCAATACGAG
GAGCAAGAGGATGCCACTCGAGCTCTTGAGGCTACAAACAACAGTAAGCTGATGGATAAGGTGATCTCGGTGGAGTATGCAATGAA
AGATGATGATGCAAGAGGGAACGGACACAGTCCCGAAAGACGCCGTGATGGGTCACCAGAAAGGAGAAGGCGATCGCCTAGTCCTT
ACAAGAGAGAGAGAGGGAGCCCTGATTATGGCCGAGGGGGTAGTCCTGTTGCTGCATACAAAAGGGAAAGGACCAGTCCTGACTAC
GGGAGAAGACGTAGCCCAAGTCCTTACAAGAGAACAAGGCGTAGTAGTCCAGAGTATGGTCGCGACCACCGCCACAGAGGCAATGA
GAGCCCTAGGAGGAGGGAGAGAGTTGCTAGCCCCAGGTACAGTCGAAGTCCTGATAACAAGAGAGAGAGGGTGAGTCCTGACCGCA
GCCCGTTTAAGAAGGAAAGTTTGAAGAACGGAGATGGTGAAGTTGATAGCCCAAGGAGGGAGAGATCAAGGTCTAGCCCTGGGAAT
GGGCAAGTTGAAAGCCCTGGCTCTATAGGGAGAAGGGACAGTGATGGTGGCTACGATGGTGCAGATAGCCCCCCGATGCAGAAGAG
CCGGTCTCGTTCGCCTCCAGCTGAAGAGTGAATGAAAAGTGGATACATCAAAGTAGGGTGATGTAGTCAAACTCTCTGTGTCATGT
GTTGTGTTTAGTTTCTTTGCTATTTGATACATTTGAACTAGGATCTCTTTTTATTGTTGGATTGAAGAAAACTTATCTTGTGTG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002869670 hypothetical protein ARALYDRAFT_492278 [Arabidopsis lyrata subsp. lyrata] | 1605 | 3e-176 |
| NP_194280 arginine/serine-rich-splicing factor RSP40 [Arabidopsis thaliana] | 1592 | 9e-175 |
| AAB18813 splicing factor At-SRp40 [Arabidopsis thaliana] | 1583 | 1e-173 |
| CAB81360 splicing factor At-SRp40 [Arabidopsis thaliana] | 1583 | 1e-173 |
| NP_001078447 arginine/serine-rich-splicing factor RSP40 [Arabidopsis thaliana] | 1407 | 3e-153 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P92965 Arginine/serine-rich-splicing factor RSP40 | 1592 | 4e-176 |
| P92966 Arginine/serine-rich-splicing factor RSP41 | 1253 | 8e-137 |
| P92964 Arginine/serine-rich-splicing factor RSP31 | 727 | 8e-076 |
| Q10021 Probable splicing factor, arginine/serine-rich 5 | 184 | 7e-013 |
| Q23121 Probable splicing factor, arginine/serine-rich 1 | 164 | 1e-010 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9M0K9 Splicing factor At-SRp40 (Fragment) | 1583 | 7e-174 |
| A8MRZ9 AT4G25500 protein | 1407 | 2e-153 |
| B9DH58 AT4G25500 protein | 1403 | 5e-153 |
| Q3E9W5 Putative uncharacterized protein At4g25500.2 | 1369 | 4e-149 |
| Q3E8C5 Putative uncharacterized protein At5g52040.2 | 1260 | 2e-136 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G25500.1 ATRSP35; RNA binding / nucleic acid binding / nucleotide binding | 1593 | 3e-177 |
| AT4G25500.3 ATRSP35; RNA binding / nucleic acid binding / nucleotide binding | 1408 | 7e-156 |
| AT4G25500.2 ATRSP35; RNA binding / nucleic acid binding / nucleotide binding | 1375 | 5e-152 |
| AT5G52040.2 ATRSP41; RNA binding / nucleic acid binding / nucleotide binding | 1261 | 8e-139 |
| AT5G52040.1 ATRSP41; RNA binding / nucleic acid binding / nucleotide binding | 1254 | 5e-138 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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