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Information for unigene UN47210
| FASTA Sequence |
| Unigene ID: UN47210 | Length: 994 |
SSR | | GGGAGGAAATATGTTTCTTTCAAATATAACACAAATACTTGCTTGCTAGACAAGTCAAATCATTTTGAAGGGTTCTCTTTAGCCCA
CAAAAGAACAAATTTACAGCATGTAGTAATATAATAAAAGTTTAGAGATAACTGGCGAAGAAGAGAGGTGATGGGAGGAGAGACAC
GTTCCCCCCATTGTTTGAACTCAAAAGCATTCTTCTGGGAGAGATACTCTCCTTAGCATTCACACCCTGTAGACCTCTGCTGATTG
CTTGTCCCGACATCGATTGTGTCCGGCAAGTATAGCTCTTCCTCTTCGCCGCTCTTCAGAGCGTTCTTGGCGATGCATTGGAAAGC
CTCCTCAACATTGGTGCCTTCCTTAGCAGAGGTTTCAAAGTAGGGAATGTTTCCCTTTGGAGCGCACCAAGCTTTAGCCTTCTTCT
CTGAAACCACTCTGCTGTTTCCACCATCCACGTCAACCTTGTTTCCGATAAGAACAAACGGAAAGTTCTCTGGATCCGATGGACTC
GCCTGGATCAGAAACTCTTCTCTCCAGTTGTTGAGATTTTCAAAAGATTTCATGGAGTTGACATCATATACAAGAACACAGCAATC
AGCACCCCGGTAAAAAGCTACACCAAGGCTCTGAAACCTTTCTTGCCCAGCCGTATCCCAGATCTGTAAAGTGAAAAGACGATCTT
CAAACTGGACTTCCTTAGTCAAGAAGTCAGCTCCAATGGTGGCTTTGTACTGGTTGCTGAACTTTTTATTAACATATTGATTCATC
AGAGAGGTCTTCCCCACCCCGCTATCGCCGAGGATGATGACTTTGAGGAGGGTACGCCTACGGGACGGCATCGAATCGGACCTAAA
AGAGAGAGATAGACAGATTCTACGATCTCTGGTTATGTTCTGTGGGTGGAAGAAGAACGACGGTGTTTTTCTCTCTCTCTCTCTCT
CTCTGCGAGTCTAAGCTGTTCCTGATCTGTCTGACTGTCTTGTAATCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002883153 hypothetical protein ARALYDRAFT_898258 [Arabidopsis lyrata subsp. lyrata] | 1075 | 5e-115 |
| NP_188512 Ras-related protein Rab-7A [Arabidopsis thaliana] | 1056 | 9e-113 |
| XP_002313053 predicted protein [Populus trichocarpa] | 1045 | 2e-111 |
| AAM60858 GTP binding protein, putative [Arabidopsis thaliana] | 1042 | 4e-111 |
| ABB02623 unknown [Solanum tuberosum] | 1039 | 8e-111 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P31022 Ras-related protein Rab7 | 1020 | 6e-110 |
| Q40787 Ras-related protein Rab7 | 979 | 3e-105 |
| O24461 Ras-related protein Rab7 | 973 | 2e-104 |
| Q9XER8 Ras-related protein Rab7 | 955 | 2e-102 |
| P93267 Ras-related protein Rab7A | 928 | 3e-099 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LS94 AtRab71 | 1056 | 6e-113 |
| A9PE06 Predicted protein | 1045 | 1e-111 |
| Q8LGH5 GTP binding protein, putative | 1042 | 2e-111 |
| C6SW04 Putative uncharacterized protein | 1039 | 6e-111 |
| Q38JI9 Putative uncharacterized protein | 1039 | 6e-111 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G18820.1 ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F); GTP binding | 1057 | 3e-115 |
| AT1G49300.1 RABG3E (RAB GTPASE HOMOLOG G3E); GTP binding | 1013 | 3e-110 |
| AT1G49300.2 RABG3E (RAB GTPASE HOMOLOG G3E); GTP binding | 1013 | 3e-110 |
| AT1G52280.1 AtRABG3d (Arabidopsis Rab GTPase homolog G3d); GTP binding | 947 | 1e-102 |
| AT3G16100.1 ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C); GTP binding | 947 | 1e-102 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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