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Information for unigene UN47230
| FASTA Sequence |
| Unigene ID: UN47230 | Length: 1225 |
SSR | | GGGGCTTCTCCAACTTGTGCGCCCCCTCCTCTTCCATGGCTTCGAGAATTGCTGATTCTCTATTCGCCTTCACGGGCCCACAACAA
TGTCTCCCTAGGGCTCCTCAAGTTGCTCCTGCTCGTCTTTCTCCAGGTGTGTATGCTGTGAGACCTATTGATCTTCTGTTAAGAGG
TCATGCGCATAGAAGGAGAACGTTCTTGGTTTCTGCAAAGAAAAGGGTTGGATGTATAAAAGCGGTGGCTGCTCCAGCCGCACCTC
CTTCAGCTGACAGTGCGGAAGAGAGGGAACAGTTAGCAGAAAGCTATGGGTTCAAACAAATTGGACAAGATCTTCCTGATAATGTT
ACTTTAAAAGATATCATGGATACTCTTCCCAAAGAGGTGTTTGAGATTGATGATGTGAAGGCTTGGAGGTCTGTGTTGGTATCTGT
GACGTCCTACGCTTTGGGGCTCTTCATGATTGCGAAAGCGCCTTGGTATATGCTTCCGTTGGCTTGGGCTTGGACAGGAACTGCAG
TTACAGGGTTCTTTGTGATAGGGCATGATTGCGCTCATAAATCATTTTCAAAGAACAAATTGGTTGAAGACATTGTGGGTACTCTA
GCATTTCTACCTCTTGTATACCCGTATGAGCCATGGAGGTTTAAGCATGACCGCCATCACGCCAAAACCAACATGTTAGTTCATGA
CACAGCTTGGCAACCAGTTCCACCAGAGGAGTTTGATTCATCACCTGTTCTGAGAAAGGCAATCATTTTTGGATATGGCCCTATTA
GACCTTGGTTGTCCATAGCTCACTGGGTGAACTGGCACTTCAATCTGAAAAAGTTCAGACCGAGTGAAGTGAATAGGGTGAAGATA
AGTCTAGCTTGTGTCTTCGCCTTCATGGCCGTTGGGTGGCCACTGATCATATACAAAGTTGGTATATTAGGATGGGTAAAGTTCTG
GCTGATGCCATGGTTGGGCTATCACTTTTGGGTAAATGCTTCTCTTTGTTCTCTCTCTCTCTCTTTTGTTCGATAAAGCATCAGAA
GAAGCCACAACGGTTATTATTTCTTCTATAGATGAGCACGTTTGATAAGATCATAACTGTTTCCTATATTCTAGGATTGTCTCCCA
TTACTGCACGTTTACCATTTGTTTAGTGGACAGTTATTGTACGTACTTTCTATGTATTTAAGAGACTATTATTGTCTTATGAAAGG
ATATGAAAAGAAAATTGCAGT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| P48627 RecName: Full=Omega-6 fatty acid desaturase, chloroplastic; Flags: Precursor | 1598 | 2e-175 |
| AAT65203 omega-6 desaturase [Brassica napus] | 1591 | 1e-174 |
| AAT65208 omega-6 desaturase [Brassica napus] | 1584 | 7e-174 |
| ABI73993 omega-6 fatty acid desaturase [Descurainia sophia] | 1557 | 9e-171 |
| XP_002867319 omega-6 fatty acid desaturase [Arabidopsis lyrata subsp. lyrata] | 1557 | 9e-171 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P48627 Omega-6 fatty acid desaturase, chloroplastic | 1611 | 2e-178 |
| P46312 Omega-6 fatty acid desaturase, chloroplastic | 1550 | 3e-171 |
| P48628 Omega-6 fatty acid desaturase, chloroplastic | 1190 | 1e-129 |
| P48629 Omega-6 fatty acid desaturase, chloroplastic | 1077 | 2e-116 |
| P20388 Fatty acid desaturase | 579 | 1e-058 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q6DUV9 Omega-6 desaturase | 1591 | 7e-175 |
| Q6DUV4 Omega-6 desaturase | 1584 | 5e-174 |
| Q09GN7 Chloroplast delta-12 fatty acid desaturase | 1557 | 7e-171 |
| A9PGN3 Putative uncharacterized protein | 1226 | 2e-132 |
| Q9AXY4 Omega 6 reductase (Fragment) | 1219 | 1e-131 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G30950.1 FAD6 (FATTY ACID DESATURASE 6); omega-6 fatty acid desaturase | 1550 | 2e-172 |
| AT2G29980.1 FAD3 (FATTY ACID DESATURASE 3); omega-3 fatty acid desaturase | 222 | 2e-018 |
| AT2G29980.2 FAD3 (FATTY ACID DESATURASE 3); omega-3 fatty acid desaturase | 222 | 2e-018 |
| AT3G11170.1 FAD7 (FATTY ACID DESATURASE 7); omega-3 fatty acid desaturase | 188 | 2e-014 |
| AT5G05580.1 FAD8 (FATTY ACID DESATURASE 8); omega-3 fatty acid desaturase | 186 | 3e-014 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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