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Information for unigene UN47235

FASTA Sequence
Unigene ID: UN47235Length: 1019 SSR 
TTTTTTAAGATCTGTGTGAAAATCGAATCGGAGAAGATGACTGACGAACATAAACACGACGAACCTGTAACCGTTTCGGAGCCAGC
TGTTGAGATTGTGGAGAGAGAATCGCTGATGGACAAGATATCGGATAAGCTCCACCACGACGGCGGCGATTCTTCGTCGTCGTCAG
ATGACGAAGACGACAAGAAGAAGAAGAAGAAGTCTTCGGAGAGCTCTCCTTTGAAATCGAAAGTTTACCGCTTGTTCGGAAGGGAG
AAGCCTGTCCACAAGGTCCTCGGCGGTGGAAAACCGGCGGATATATTCATGTGGAAGAACAAGAAGATGTCTGGTGGTGTACTCGG
TGGTGCTACAGCCGCTTGGGTTCTCCTTGAGTTGATGGAGTATCATCTCCTCACTCTGCTCTGCCACGTCATGATTGTTGTGCTCG
CTGTGCTCTTTCTCTGGTCTAATGCCACCGTGTTCATCAACAAGTCTCCACCGAAGATTCCTGAAGTTCATATCCCTGAGGAGCCT
ATTCTCCAGCTTGCGTCTGGGCTCAGGATCGAGATCAATAGAGGGTTCTCTTCTCTTCGTGAGATTGCCTCTGGAAGGGATCTCAA
GAAGTTTGTTACTGCTGTTGCTGGCTTGTGGGTTTTGTCGATCTTGGGTGGCTGGTTCAATTTCTTGACATTGGCATACATAGCTC
TTGTCCTGCTCTTCACGGTGCCTCTTGCCTACGACAAGTACGAAGACAAAGTCGACCCGTTGGGTGAGAAAGCGATGATCGAGATC
AGGAAGCAGTATGCAGTGTTGGACGAGAAGGTGTTGAGCAAGATCCCCTTGGGCCCGTTGAAGAACAAGAAGAAAGATTAGGTTTT
TACGAAATTCGATAGAAAGAACACGGTGTTGTGAAATGGTGTCGAAGCTATGTGTTAGATATCTTTTAATATGTCATTTGGTTTTT
GTTAATTGTTGGTGAACGTGGAGGGTATCCAGTTAGTGTTGGTTCTCTTGCTCTCTCTATATATGGCTAAGAA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAJ33905 unnamed protein product [Thellungiella halophila]12655e-137
NP_194094 reticulon-like protein B1 [Arabidopsis thaliana]12468e-135
ACC91263 reticulon family protein [Capsella rubella]12315e-133
XP_002869770 VIRB2-interacting protein 1 [Arabidopsis lyrata subsp. lyrata]12144e-131
NP_192861 reticulon-like protein B2 [Arabidopsis thaliana]11275e-121

Swiss-Prot top hits (Blast detail)Scoree value
Q9SUR3 Reticulon-like protein B112464e-136
Q9SUT9 Reticulon-like protein B211326e-123
Q9FFS0 Reticulon-like protein B48924e-095
Q9SH59 Reticulon-like protein B38306e-088
O82352 Reticulon-like protein B58281e-087

TrEMBL top hits (Blast detail)Scoree value
B2WS91 Reticulon family protein12313e-133
B7FIA7 Putative uncharacterized protein9392e-099
B9RCJ7 Putative uncharacterized protein9383e-099
A9PAK3 Predicted protein9105e-096
B9GX32 Predicted protein9052e-095

Arabidopsis top hits (Blast detail)Scoree value
AT4G23630.1 BTI1 (VIRB2-INTERACTING PROTEIN 1)12472e-137
AT4G11220.1 BTI2 (VIRB2-INTERACTING PROTEIN 2)11334e-124
AT5G41600.1 BTI3 (VIRB2-INTERACTING PROTEIN 3)8933e-096
AT1G64090.1 reticulon family protein (RTNLB3)8297e-089
AT2G46170.1 reticulon family protein (RTNLB5)8281e-088

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
74  100%

Unigene MembersMember information