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Information for unigene UN47252

FASTA Sequence
Unigene ID: UN47252Length: 965 SSR 
GGAAGGAAAGAAGTTAGCTTCGTTCACGAGAATCTCTTCAACCGTTCAGGAAGCAATGGAGGAAGCTCTGATTCGTATTCTGACTC
CAAGACGCTCCATTGATATAATGAGAGACGTTCATGCCGCGAAAGAACAGAGGAGGCCTTACGTGGTCGTGTTTGTTGGAGTCAAC
GGAGTTGGCAAATCCACCAATCTTGCCAAAGTGGCGTATTGGCTTCAGCAGCATAAGGTCAGTGTGATGATGGCTGCTTGTGACAC
GTTCCGTTCTGGAGCTGTTGAGCAGTTAAGGACTCATGCTCGTAGGTTACAGATACCGATATTCGAAAAGGGTTATGAGAAGGATC
CAGCAGTGGTTGCTAAAGAAGCTATTCAAGAAGCAACTAGGAATGGATCCGATGTTGTTCTTGTTGACACGGCTGGTCGGATGCAG
GATAATGAGCCTTTGATGAGAGCTCTCTCGAAGCTCATCAACCTTAACAAACCGGATTTGGTTTTGTTTGTTGGTGAAGCTCTTGT
TGGAAACGATGCAGTAGACCAGCTCTCAAAGTTTAACCAGAAACTTTCGGATCTCTCTACTTCCGGGAGCACAAGATTGATTGATG
GAATCTTACTGACAAAGTTTGATACCATTGATGACAAGGTTGGAGCAGCTTTGTCGATGGTTTATATATCGGGAGCACCGGTTATG
TTCGTGGGTTGTGGCCAGTCTTACACTGACCTGAAGAAGCTTAATGTCAAAGCCATAGTCAAGACACTTTTCAAATGATCTTTTCA
TCGCCATCATCATCATCATCACTATCATCAACCAACCATCATCAATCAAATCAATGTCTTATCCATCATACTTTATCTGAGTTCTT
GTTTTTTGTTTTTGATTTGAAGACAGTTTCTTTTTGGCTATAATGTTTTTGTTTTTAAAAACGACATGACCATTTCGTTGAAGTAT
TAATGTAACGTTTGTTTTG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_194789 signal recognition particle receptor subunit alpha [Arabidopsis thaliana]12208e-132
XP_002867337 signal recognition particle receptor alpha subunit family protein [Arabidopsis lyrata subsp. lyrata]12208e-132
XP_002324537 predicted protein [Populus trichocarpa]12037e-130
AAQ76042 signal recognition particle receptor protein [Cucumis sativus]11992e-129
CAN66971 hypothetical protein VITISV_013670 [Vitis vinifera]11948e-129

Swiss-Prot top hits (Blast detail)Scoree value
Q54ZR7 Signal recognition particle receptor subunit alpha8323e-088
Q9U5L1 Signal recognition particle receptor subunit alpha homolog5261e-052
Q3MHE8 Signal recognition particle receptor subunit alpha5232e-052
P08240 Signal recognition particle receptor subunit alpha5232e-052
Q9DBG7 Signal recognition particle receptor subunit alpha5214e-052

TrEMBL top hits (Blast detail)Scoree value
Q9M0A0 AT4g30600/F17I23_6012205e-132
B9IMD0 Predicted protein (Fragment)12035e-130
Q6UCJ1 Signal recognition particle receptor protein (Fragment)11991e-129
A5ANZ7 Putative uncharacterized protein11946e-129
B9HB30 Predicted protein11902e-128

Arabidopsis top hits (Blast detail)Scoree value
AT4G30600.1 signal recognition particle receptor alpha subunit family protein12212e-134
AT1G15310.1 ATHSRP54A (ARABIDOPSIS THALIANA SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT); 7S RNA binding / GTP binding / mRNA binding / nucleoside-triphosphatase/ nucleotide binding3162e-029
AT1G48900.1 signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C)3144e-029
AT1G48900.2 signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C)3144e-029
AT2G45770.1 CPFTSY; 7S RNA binding / GTP binding / nucleoside-triphosphatase/ nucleotide binding2794e-025

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
62  67%
 
201  33%

Unigene MembersMember information