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Information for unigene UN47259

FASTA Sequence
Unigene ID: UN47259Length: 640 SSR 
CGTAAAAAGCCTTTTCACCAGTCGCAAATCGCAAAGTTGTAATTGCAATAGCAAAAAAAAAGGATTATCCAACCAAAAAAGCATAT
CATTTCAAGTCAAAACAGAAAACAACCATTCCGCAAAAATCTTGTCAATCAGAGAGAGAGAGAGAAAGAGAGTTCAAGGCAGTACT
CAAAGGCCAAGGCTTCTCACAAGTGATCATTAATAGAAAGTGAAGCCATCATATCACTTGGGCTACCACTCTTGCCTTCGCTAGGC
TGATTCACGTTTCTCAACACATCCAACGCCTCCGAAACTTTAGCATTTAGAGCCTCTGGTGACTCTATCAGATGCAGCACTTCTGT
CTGATCCATCTCCAGAAGCATCCCCGTCACTTTGGCAGCATTCTCGTGCTCTATCTTGTTCACTAATGGGTACAGAGTCTCACCCA
GAATTGTTCTTTGGTGAGCAGGTGAGGCTTGAGCAAGGGAAGAAGCCAATGCACCAGCGGGCATAATAGGCACTCCGTTAATGTCA
TAAGGAAATGGAACCCTTCCTCCTGGCATTGGACCGTCTGGCATGTTTCTACCACGAGGGTAACGGTGTCCGCGTCCTCCTGCCAT
CATCTGTGGATGCATATATGGCATTGGTTGCTGAGGCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002878680 PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]5771e-057
AAK25927 putative poly(A) binding protein [Arabidopsis thaliana]5619e-056
NP_179916 poly(A) binding protein 4 [Arabidopsis thaliana]5619e-056
BAD94406 putative poly(A) binding protein [Arabidopsis thaliana]5619e-056
CBI19489 unnamed protein product [Vitis vinifera]4292e-040

Swiss-Prot top hits (Blast detail)Scoree value
P42731 Polyadenylate-binding protein 23383e-031
O64380 Polyadenylate-binding protein 32749e-024
Q05196 Polyadenylate-binding protein 52408e-020
Q5KBW2 Polyadenylate-binding protein, cytoplasmic and nuclear2254e-018
Q0U1G2 Polyadenylate-binding protein, cytoplasmic and nuclear2003e-015

TrEMBL top hits (Blast detail)Scoree value
O22173 Putative poly(A) binding protein5616e-056
Q56WT6 Putative poly(A) binding protein5616e-056
Q9C5J0 Putative poly(A) binding protein5616e-056
Q00M91 Poly(A)-binding protein4031e-037
B8ARD0 Putative uncharacterized protein3709e-034

Arabidopsis top hits (Blast detail)Scoree value
AT2G23350.1 PAB4 (POLY(A) BINDING PROTEIN 4); RNA binding / translation initiation factor5794e-060
AT4G34110.1 PAB2 (POLY(A) BINDING 2); RNA binding / translation initiation factor3383e-032
AT1G49760.1 PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor3071e-028
AT1G22760.1 PAB3 (POLY(A) BINDING PROTEIN 3); RNA binding / translation initiation factor2748e-025
AT1G71770.1 PAB5 (POLY(A)-BINDING PROTEIN 5); RNA binding / poly(A) binding / translation initiation factor2407e-021

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
122  67%
 
101  33%

Unigene MembersMember information