RadishBase

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Information for unigene UN47268

FASTA Sequence

Unigene ID: UN47268	Length: 1176	SSR
GGATATCTTCGCATACGAGCGATTCGCCGGTTTCGCATCGCTTCAGGACTCAGGAGTCAGAACTCATAAGCACCGAATTCAGCCCC AAATCCAATGTCTCACTGAGTCCACCCGGGGTGCTTCGTATTCCAAGTTCTATCTTGTTCCATCGTCCTCTCGTATTTTCGTTTCT AATTGTAATGCAATCGTTGCAGAAACCCTAATTTCGGAGGGTTGTGTAAAAAGTAGCAATGGTTAAAAACGCAATTAGTGATGGTG AGTGGACAGTGGTCTTACCTAGTAAACGAAGACAAGGGAAAATAAAACCTAAACCTAAGATTCAAGAAGAAGAAGAAGAAGAGAAG CCATGGAAGTCTGATGATCTTGAACTTGATCTGCAGAGGCAAGCAAGAGTAAAGCAGAAGATGGAAAACTCTATCAAGAAAGTCGA GAGCTCAAAATTCTACGCTGCATTCTTAGAAAAGCTCAAATGCCCCGAGGTTTCGGACAAGTTTCGACTCGTGTTAGGTGGCGAAA CACAGCTTCAGATGGTGATGTACGGTATAGGAAGCATCGAGTCCTACGAGTCTCCAAGGTTTCAGCTCAGCGTTGCAATCTTGATG AAGAGGGAGTTTGAATGGGTCGGTAACATTGAAGTGTTCGATCCAGTCCTCTCGGTGACTGAATCTAGTGTCTTGGAGTCTCTGGG GTGTACTGTTTTGTCTGTGAACGAGCAAGCTCGTAGGGAAGCTTTGAAGCCTACTCTTTTCTTCATGCCGCACTGTGAGGCTAATC TGTATAGCAACCTGCTGCAAGCGAACTGGAGGATGGATAGGTTGCGCAGGATTGCATTGTTTGGGAACAGCTTTCAGATGTATGAG GAGCAGGTGACGTTTAAACCGAATGTCATCCGTGCCCCCAGACGGATCATAGCTGCACGAAGAATCACTTGTGAGTTTGCTATTGA GACTGTATCTGATGATTATTTTCCAGCGTTCCATGATTCAAGCTGGCATTTTTTCAGCCCCGGTTTAGATTCGGAGCTGCCGTTGT TGGTTTCAGAGGGATTATAGATCATTGTTTTTTGCATTTGTCATGTCTTTGTGTTTTGTCTATCCTCTTCTAAGTTTAAACCATTG AAGTTGTTGACTTATCATTGGTTTAATATTTGCTTGAAACAATGAAATATGTTATCAC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002866338 sensitivity to red light reduced protein 1 [Arabidopsis lyrata subsp. lyrata]	1120	4e-120
NP_200764 sensitivity to red light reduced protein [Arabidopsis thaliana]	1119	5e-120
AAY62602 sensitivity to red light reduced protein 1 [Arabidopsis thaliana]	1115	2e-119
AAY62603 sensitivity to red light reduced protein 1 [Arabidopsis thaliana]	1107	1e-118
XP_002520923 Protein SENSITIVITY TO RED LIGHT REDUCED, putative [Ricinus communis]	814	1e-084

Swiss-Prot top hits (Blast detail)	Score	e value
Q8GWZ6 Protein SENSITIVITY TO RED LIGHT REDUCED 1	1119	2e-121
Q8K2M3 SRR1-like protein	237	4e-019
Q9UH36 SRR1-like protein	222	2e-017
Q9VEB5 SRR1-like protein	138	1e-007

TrEMBL top hits (Blast detail)	Score	e value
Q24JI3 At5g59560	1119	4e-120
Q4PRK8 Sensitivity to red light reduced protein 1	1115	1e-119
Q4PRK7 Sensitivity to red light reduced protein 1	1107	9e-119
B9S4K4 Protein SENSITIVITY TO RED LIGHT REDUCED, putative	814	9e-085
B9GWW7 Predicted protein	789	7e-082

Arabidopsis top hits (Blast detail)	Score	e value
AT5G59560.1 SRR1 (SENSITIVITY TO RED LIGHT REDUCED 1)	1119	2e-122
AT5G59560.2 SRR1 (SENSITIVITY TO RED LIGHT REDUCED 1)	1119	2e-122

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	3			100%

Unigene Members	Member information