RadishBase

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Information for unigene UN47269

FASTA Sequence

Unigene ID: UN47269	Length: 1176	SSR
GGACTTGTTAACATTCCTACAAACTGTAGCCGAGAAAGACCATTCATTCCTTTTGTGCTATGATGATCATGTGATATCTCTTACTA GCTTCTTCTTTGTTCTGTAATAAAAATTAGAAAGAAAAGATGGGTAGATCACCGTGCTGTGACAAGATGGGTTTGAAGAAAGGACC ATGGACATCAGAAGAAGATCAGAAACTTTTGGCTTATATTGAATAACATGGGCATGGAAGTTGGCGTTCACTGCCTGAGAAGGCTG GTCTCCATCGATGCGGCAAAAGTTGTAGACTTAGATGGACAAACTACCTAAGACCAGACATCAAAAGAGGCAAATTCAACTTGCAA GAAGAACAAACCATTATTCAACTCCACGCTCTCTTAGGAAACAGGTGGTCGGCGATAGCCACTCATTTGCCAAAGAGAACAGACAA CGAGATAAAGAACTACTGGAACACGCACTTGAAGAAACGGTTAGTTAAAATGGGGATAGATCCAGTGACTCATAAACCCAAAAACG AGACTCCTCTGTCTTCTTCTCTTGGTGGTTTATCAAAGAACGCAGCCACACTTAGCCACATGGCTCAATGGGAAAGTGCTAGGCTT GAAGCTGAAGCAAGGCTAGCTAGAGAGTCAAAGCTTCTTCTTTACCAAACCAAAGTATCATCATCATCATCATCTTCTCATCATCA TCATCATCAGCAGCAGCTTGAATTTCCGACATCTACAGTGTCATTCTCGGAAGCCAAGACAGAGTTCGTCGGATCATCATCATCAG CATCAACGTGTCTAAATATGATCAAAGAAGCTGAAAACGATTGGATCAGTTCAACGATTCACGAGTTCCAAGGAGTCGAAGAAAGC CTCACGGGTCTCTTGCTAGGTGGCGGTGATTCACTAGGCCGGAGTTTTTCAGCCGATAAAAATGAGACGGCTGGCGAGACTAGTGG TGACTGTAACAACGGTTACCATGAGGACAACAAGAACTATTTGGACAGCATTTTCAGCTTTGTGGATCCTTCGCCGTCCGATTCAG CTCCTTTGTTCTGAATCAAGGGCTGATATCTCTCTAGGGGAATGTTTTGGATTCTTTTTTTTTTGTCAACGAATGTTTTGGATTCT TTTAGTTCTTAATTTGTGGGGTGTGTAAACTCTCTGATTAGATAAAAAAAAGTTTTTC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_001078589 myb domain protein 16 [Arabidopsis thaliana]	1212	9e-131
XP_002871660 AtMIXTA/AtMYB16 [Arabidopsis lyrata subsp. lyrata]	908	2e-095
NP_197035 myb domain protein 16 [Arabidopsis thaliana]	906	3e-095
BAJ34432 unnamed protein product [Thellungiella halophila]	905	4e-095
AAF26160 putative Myb-related transcription factor [Arabidopsis thaliana]	837	3e-087

Swiss-Prot top hits (Blast detail)	Score	e value
O49608 Transcription factor MYB32	544	1e-054
Q8GWP0 Transcription factor MYB39	543	1e-054
Q50EX6 Protein ODORANT1	520	7e-052
Q9SZP1 Transcription repressor MYB4	512	6e-051
Q38851 Transcription repressor MYB6	511	8e-051

TrEMBL top hits (Blast detail)	Score	e value
Q9LXF1 At5g15310	906	2e-095
Q9LE63 Putative Myb-related transcription factor	837	2e-087
Q6R098 MYB transcription factor	827	3e-086
Q02992 Protein 1	815	7e-085
B9IK06 Predicted protein	809	3e-084

Arabidopsis top hits (Blast detail)	Score	e value
AT5G15310.2 ATMYB16 (MYB DOMAIN PROTEIN 16); DNA binding / transcription factor	1213	3e-133
AT5G15310.1 ATMYB16 (MYB DOMAIN PROTEIN 16); DNA binding / transcription factor	906	1e-097
AT3G01140.1 MYB106 (myb domain protein 106); DNA binding / transcription factor	821	8e-088
AT3G61250.1 AtMYB17 (myb domain protein 17); DNA binding / transcription factor	637	2e-066
AT1G34670.1 AtMYB93 (myb domain protein 93); DNA binding / transcription factor	604	1e-062

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	4			100%

Unigene Members	Member information