RadishBase

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Information for unigene UN47278

FASTA Sequence

Unigene ID: UN47278	Length: 1012	SSR
GGGATTAACGACAGTCGCCGAGTGAGAGAAGAGGGAGATAGAGAGAGAGAGAGAGAGAGAGAGATGACGCTGAACGATGAGCAAGA GCACGAGGTGTACGGGGGAGAGATCCCAGAGGAGGAAGGAGAGATGGAGACGGACGAGTACGAGGAACACGTCGGTGAAGAAGAAG GCGCCGCAGCCGGAGGAGACGAGGAGCTTGAGCCAGGCTCTAGCTCTAAGGATCTGGAGGATATGAAGAAGCGAATCAATGAGATC GAGGAAGAAGCTGGAGCTTTGCGTGAAATGCAAGCCAAAGCTGAGAAAGAAATGGGCGCTGATCAAGATCCGTCAGGTGCTATTAG TTCGGCTGAGAAGGAGGAAGTTGATTCCCGTTCAATCTATGTTGGCAATGTGGACTATGCATGTACCCCAGAGGAAGTCCAGCAAC ATTTCCAGTCCTGTGGGACTGTCAACAGGGTTACGATTCTGACAGATAAGTTTGGACAACCCAAAGGTTTTGCCTACGTCGAATTT GTGGAAGAAGATGCTGTTCAGAATTCTCTTATCTTGAATGAGTCAGAGCTGCATGGTCGTCAGATAAAGGTATCAGCAAAGAGAAC TAACGTCCCTGGAATGAGACAATTCCGAGGAAGACGTCCCTTTCGACCCATGAGAGGATTCATGCCTGGAATTCCATTTTATGCTC CATATGGTTATGGGAGAGTTCCCAGGTTCAGACGGCCAATGCGCTACAGACCATACTGATTAAAAAGCAAAATTGGGTGGTAAAAG TAGCAGCTGCCTTTTGCTTTCAGTAAGGCTATTATCATCAATCCGTGTTTCATTAGGCCGCACACGTTGCTTCGATTAAAGAGAGG TGGGCTGAAGAATCTTATGGCAGAAGAGAGAAAGAGGCAAAGAATGAAAAAATATGTTTTAGATTTTATGTACAATGTTTGATATG AGAGAAGAGCAACAATTTGAATTCGTTTCTGTTTTATCTTTTGCAAAACTCATAAAGCTTTATATT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002864097 hypothetical protein ARALYDRAFT_918145 [Arabidopsis lyrata subsp. lyrata]	1059	4e-113
NP_568751 polyadenylate-binding protein 1 [Arabidopsis thaliana]	1055	1e-112
AAM61036 contains similarity to poly(A)-binding protein II [Arabidopsis thaliana]	1052	3e-112
BAA97374 unnamed protein product [Arabidopsis thaliana]	975	2e-103
AEN74948 poly(A)-binding protein 1 [Citrus sinensis]	869	4e-091

Swiss-Prot top hits (Blast detail)	Score	e value
Q9DDY9 Polyadenylate-binding protein 2-A	389	9e-037
Q7ZXB8 Polyadenylate-binding protein 2-B	388	1e-036
Q8CCS6 Polyadenylate-binding protein 2	387	1e-036
Q6NVP7 Polyadenylate-binding protein 2	385	2e-036
O14327 Polyadenylate-binding protein 2	380	9e-036

TrEMBL top hits (Blast detail)	Score	e value
Q93VI4 AT5g51120/MWD22_6	1055	8e-113
Q8LG48 Contains similarity to poly(A)-binding protein II	1052	2e-112
Q9LU62 Similarity to poly(A)-binding protein II	975	2e-103
B7FL26 Putative uncharacterized protein	803	1e-083
B9ICE3 Predicted protein	767	2e-079

Arabidopsis top hits (Blast detail)	Score	e value
AT5G51120.1 PABN1 (POLYADENYLATE-BINDING PROTEIN 1); RNA binding / poly(A) binding / protein binding	1060	1e-115
AT5G65260.1 polyadenylate-binding protein family protein / PABP family protein	709	6e-075
AT5G10350.1 polyadenylate-binding protein family protein / PABP family protein	668	3e-070
AT5G10350.2 polyadenylate-binding protein family protein / PABP family protein	601	2e-062
AT2G16940.1 RNA recognition motif (RRM)-containing protein	132	5e-008

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	2			100%

Unigene Members	Member information