RadishBase

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Information for unigene UN47319

FASTA Sequence

Unigene ID: UN47319	Length: 1199	SSR
AAGAAAATCTATAACACGTTGACAAAAAAAAAGAAAAACTATAACACAAGTCTTTTCTTCCCACATGAGAGATCATTTATGCAGCG TATAAGTAACTTACAGACATGCCAACCATCTTTTTTTATGATTACAATAACAGTTATGAAGCTCTGATCATAATCCATATAGAAAG ACAAAAAAAAAACAAGAAATCTTCTAAAACTTCTGAAGAACAACAGAGTTGGCGAGACCAGCTTGTTCAATGGTCTGAGTGGGATC AGTCAAGGGCGCAGGTGGGAACCCCATTGTCTGAAGCTGGTAGTTAACCGGCGCTCCAGGTCGAGAAGAGTCGATGAAACCTCGAA TGTCGTTGACAGTGTGATGAAGATTAAACTTGCCCACAAGCCTGGTCCCATCCGTTAGTCTAATCTGGATCGATGTGGTCGGAAGG GTTTCATCTATTACAAGACTTGGAGTTGGTGATGGTGCTGCTAAACCGGTTTGGTTGGTTTGGATGGGAATGGCGGCGGCGGCATC TGGAGCTATTGATGAGCCACTTCCGCTGCTGTCGTTGCTGCTACCACCTAGAGTCCTCCCAACACCCTGGAATGAAACCTTACGCT TCTCTCGTTCTGGACATTTCTCTTCCCTCCGCATCAGATTGACATGAACAGGGGCTCTTCTATCAGCAGGCTCAAGCTCTTTCGGA CACTCAGACTTTCGAATGCTCTCGAGAAAAGAAGCGTTCTCTGGATCATCCAACTTCCTCAAAGGACCATCATCAATGGTGAATCC ATTAGCCCAAAAAACAATGGTGTGAACCACAGGCTCAGGCTGTTGAGTACCAGCTGAAACACTCTCTCCTGAAAGCAATCTCCCAG TTCCGGTAAAGCTCGTGGAGCTTGAAGAAGGAGTCTCGAGAGGTCCTTCCACGGCTCCTAGTTGTCTAGCTTGATTGAATATCTCA TCAACATCGTCTTTCTTCGAAGGATCTTGAACAAGCATACCACTTTTCTCACCACCGGTGTAGTATTCCTGAGGACTGTCGGAATC ACTGTCGGAGTCAGGACCAGACCTTCGATTGAGATCGGACAGAGTGCGGATTCCACCGGCTCGGCTACTTGATGGCCTCACCGGTT TCTTGTCTTTGGATGACATTTTTTTCTAGGGAAACGACTTTAAGAGAGAGAGAGAGAGTTTGAGGTATCAAATAAAGATCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002872684 plant UBX domain-containing protein 4 [Arabidopsis lyrata subsp. lyrata]	1378	5e-150
NP_567262 UBX domain containing protein 4 [Arabidopsis thaliana]	1326	6e-144
AAC28225 contains similarity to rat p47 protein (GB:AB002086) [Arabidopsis thaliana]	1295	2e-140
XP_002317152 predicted protein [Populus trichocarpa]	1156	3e-124
ACU19568 unknown [Glycine max]	987	1e-104

Swiss-Prot top hits (Blast detail)	Score	e value
Q7Y175 UBA and UBX domain-containing protein At4g15410	900	6e-096
Q54BQ5 NSFL1 cofactor p47 homolog	440	1e-042
Q5ZLK2 UBX domain-containing protein 2B	333	3e-030
Q9UT81 UBX domain-containing protein 3	250	1e-020
Q9UNZ2 NSFL1 cofactor p47	191	1e-013

TrEMBL top hits (Blast detail)	Score	e value
Q8RWU7 CDC48-interacting UBX-domain protein	1330	1e-144
O81456 Putative membrane trafficking factor	1314	1e-142
B9HZB4 Predicted protein	1156	2e-124
A5BGG6 Putative uncharacterized protein	1111	3e-119
C6TCL6 Putative uncharacterized protein	987	8e-105

Arabidopsis top hits (Blast detail)	Score	e value
AT4G04210.1 PUX4; protein binding	1336	1e-147
AT4G15410.1 PUX5 (Arabidopsis thaliana serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma); protein binding	901	4e-097
AT4G22150.1 PUX3; protein binding	884	4e-095
AT3G21660.1 UBX domain-containing protein	273	3e-024

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	2			100%

Unigene Members	Member information