 |
Information for unigene UN47355
| FASTA Sequence |
| Unigene ID: UN47355 | Length: 993 |
SSR | | AAGTCTGTATAAGTGTGTTATTTAATACACCTAAGGACCAAATAAGACATTCTTAATCTATGTTGAGAATTACATATGAAGTTTGT
GTAAGTGTGTTCAAGGCTTTCGCATATTATTACTTGGGAAATATAGATAACTTTAGTAGTTGGACAAACAAACTCGATCTCAAAAG
CTTTTAAGAGGAAGAAGAGGAACTTAGCATCCTTTGTTTGATCCATGACTCCAGATACTGAAGCTCATTATTACTGATTGAGTGTC
CAAGATCTGGATATGCCTTAAATTCACAAGTGACACCAGCTTGTTGAAGGAAAGGAAGAGCTGCTTGACCAGCTTCGAATAGTACC
GTCTTGTCATCAATCCCATGAGACCACAAGATTGGTGTCTTTATAGCATCTTTGGTAAACTGATTGATGACAGAAGAATTGAATGG
AACCCATCCGCTAAAGACTGCACCTCCTCCAAGAGTTTTGGGGTGAAGCAGAACACTAGCCAAGGTTAATGCCCCTCCTTGGCTAA
ATCCGCAGATATACACGTTTTGAGGACTCACTCCTCCAGCAATCTCCTTATCTATAATGGCATGAACGTTCTTAACAGCTTCAAGC
ACGCTGCTTTCGTCATTAGGAGAGCCCGCGGTAAGAGGAAGCTCACGGATGTCAAACCAGGAAGGCATCACCATACCATGATTGCA
GGAGACAGGATTAGGAGGAGCAGAAGGGAAGAGCCATTTGGTGTTTGTAAACTCCGGAGACTTGAAAAGTGACTTGATGGGTTCGT
TGGCAGGTCCGGAATCTCCAAGCCCGTGAAGCCACAAGATGAAGGTTCTTCGAGCCATGGAGTCTGAAGAAGAGGGATATGATGAT
GATGATGAGTAAGGCTTGTCTTCGAAGAAGAATGCGAAGAAGAGGACGGTGCTCAACAGTGCGATCGAGAAGAGAACGATCGGTTT
CGTCAATGTGCTTGTTCGCATGTCAATATCGATCCTGCCGTCACCCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_193961 carboxylesterase [Arabidopsis thaliana] | 1146 | 3e-123 |
| XP_002867777 carboxylic ester hydrolase [Arabidopsis lyrata subsp. lyrata] | 1129 | 3e-121 |
| ABO26814 SOBER1-like protein [Arabidopsis thaliana] | 1030 | 9e-110 |
| CAA16780 putative protein [Arabidopsis thaliana] | 1009 | 2e-107 |
| XP_002317196 predicted protein [Populus trichocarpa] | 916 | 1e-096 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q5KFA4 Acyl-protein thioesterase 1 | 366 | 4e-034 |
| Q6CGL4 Acyl-protein thioesterase 1 | 305 | 5e-027 |
| Q6FW75 Acyl-protein thioesterase 1 | 296 | 5e-026 |
| Q6CJK6 Acyl-protein thioesterase 1 | 290 | 3e-025 |
| Q4I8Q4 Acyl-protein thioesterase 1 | 289 | 3e-025 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8GYK2 Putative uncharacterized protein At4g22300/T10I14_130 | 1146 | 2e-123 |
| A4KWB1 SOBER1-like protein | 1030 | 6e-110 |
| O49635 Putative uncharacterized protein AT4g22300 | 1009 | 2e-107 |
| B9HZJ0 Predicted protein | 916 | 1e-096 |
| B9RXD5 Acyl-protein thioesterase 1,2, putative | 905 | 2e-095 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G22300.1 SOBER1 (SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1); carboxylesterase | 1152 | 3e-126 |
| AT1G18773.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: SOBER1 (SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1); carboxylesterase (TAIR:AT4G22300.1); Has 30 Blast hits to 26 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 171 | 1e-012 |
| AT3G15650.1 phospholipase/carboxylesterase family protein | 130 | 8e-008 |
| AT1G52700.1 phospholipase/carboxylesterase family protein | 126 | 2e-007 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
