Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN47403

FASTA Sequence
Unigene ID: UN47403Length: 1373 SSR 
GGAAAGAAACCTAAACTCACAAAAACCTAAAAGCAAAACCTAGTGGACGACGGCGACAGGAGGAGAAGAGAGAAACTCAGATCTTT
TGTCATGGCACCGAAGCAGTCTGACAAGATCGAGAACCCTCCTCCGGCTGCCTCTTCCAGCGAAGAAGAAGAAGAAGAAGAGTCCG
GCTCATCCGGAGAAGAAGAAGAATCCGGATCTTCCGACGACGAAGCTGGCGATGTCCAGTCCAAGCTCACTCAGAAACCTCCTCCT
CCTGCTACAAAGAAGTCTCCCGAATCCGATTCCGAAGAAGACGAATCCGATTCCGATTCCGATTCCGAACCTCCCACCAAAACCAA
GCCTCTCAACACCGTCACCTCCAAACCAAAGCCAGAGACCTCCGGATCCGTCGCTACGTCTCTTCCCGAGAGCTCTACAGCCAAGC
GTTCTCTGAAGCAAGCAGACGACGAAGAGCCTAAGAAGAAGGCGAAGACAACAACAACGACAACAGAGAATGTGAAGAAGAAGAAG
GATGAAGGGGTTAAGAAGATCTCGGGAGAAGACGCGAAGAAGATGTTCCAGAGACTGTTCAGCGAGACAGACGAAATCGCCATGCT
TCGAGGCTTTCTCGACTTCACATCCACTAGAGGCGACCCTTACGAGAACATGGACGCCTTCTGCGACTACGTCAAGACCTTGATCG
ATTTCAACGCCTCCAAAGCTCAGATTGTCACCAAGCTACAGAGGTGTAAGAAGAAGTTTGTGAACATAGTGAAGAACGCGCTCAAG
AAAGGCAAGACGGAGGATAAGGTCACGTGTTCTAAGGATCTTGACCAGAAAGCTTTCGACTTGTCGAGGAAGATTTGGGGAGCTAA
CGGTGTTCTTCCCGCCAAACCGAGGAAGAAGTCTTCGAAAGAGGATGTGAAGTCTCCTCCTTCGCCTTCGCACACGCCTAAGAAAC
TGGAGAAGCAGAAGGGGGTTGTTATTGTGGATGATGCTCAGCTCTCGTCGAGTAGAGAGGTGGCGATGTTCTTCAAGGCGGAGAAT
GTGAGTGTTTTTGGTTTGGATGAGTCCACGGTGAGTGCGGTTTGGGGTATGGTTGAGGATGGACCGAAGAAGAGGGAGATGGAGGG
GAAGCTGAAGAAGCTTAAGGCTATGCAGGTGGAGCTTTGTTTGCAGAGAACTGCGTTGTTGGACACTACTGCAAAGATGATATTCA
AAGACAATGCGTCGTCTTCATATTGATGGTTTGTTCTTTTTTTTCTTACTCTTTTTAGTATTGCATAGCTTGTGGAACTAATGCTA
TGGTTAAGTCTTAGTCGATATTTTTATTCTTAAGCCCTTTATGTTGTTGGATGCTTGGTTTGGGTATAAATTCCCTTATGTAG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002869685 hypothetical protein ARALYDRAFT_914061 [Arabidopsis lyrata subsp. lyrata]8671e-090
NP_194251 DNA-binding storekeeper protein-related transcriptional regulator [Arabidopsis thaliana]6861e-069
XP_002300270 predicted protein [Populus trichocarpa]4915e-047
AAK62441 putative protein [Arabidopsis thaliana]4386e-041
AAN65068 putative protein [Arabidopsis thaliana]4378e-041

Swiss-Prot top hits (Blast detail)Scoree value
P15771 Nucleolin1417e-008
Q8CFT2 Histone-lysine N-methyltransferase SETD1B1372e-007
A7EFS3 Protein pxr11354e-007
Q9P785 LisH domain-containing protein C1711.051354e-007
Q9UIF8 Bromodomain adjacent to zinc finger domain protein 2B1345e-007

TrEMBL top hits (Blast detail)Scoree value
Q9SB42 Putative uncharacterized protein AT4g252106868e-070
B9GI96 Predicted protein4913e-047
A9PAA7 Putative uncharacterized protein4644e-044
Q94F05 Putative uncharacterized protein F24A6.504384e-041
Q8H0X7 Putative uncharacterized protein At4g252104376e-041

Arabidopsis top hits (Blast detail)Scoree value
AT4G25210.1 transcription regulator8863e-095
AT4G01260.1 transcription regulator4321e-042
AT1G61730.1 DNA-binding storekeeper protein-related3674e-035
AT4G00130.1 INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: transcription regulator (TAIR:AT4G25210.1); Has 54 Blast hits to 54 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).2223e-018
AT5G23180.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, D bilateral stage, LP.08 eight leaves visible; BEST Arabidopsis thaliana protein match is: transcription regulator (TAIR:AT4G01260.1); Has 16 Blast hits to 16 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).2025e-016

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
122  67%
 
81  33%

Unigene MembersMember information