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Information for unigene UN47409
| FASTA Sequence |
| Unigene ID: UN47409 | Length: 2172 |
SSR | | AATCGAGAGGGGCGTGTCTCTTATACGATAATCTTGTGGTGGTCTGTGGTGTGACATCTTGAGCCAAACACACACGAGTATAGAGA
GATTAGAGAAGAAGAAGAAGAAGAAGACGACGACGACGCTTACCCAAAGCTCGAATCCCTAGGTTTTGGCTAAAAAAATATACAGT
TATTGTTATCCCCAAGGCAATCTATCCATTAGATATGAACTTAAGCAAGAAAGCAACGTCAAGTGATTCAAAGCTAAGTTCTACTC
TCAAGCCAACAACTTTGAACCCTCATGCTGCTGAGTTTGTTCCCTTTACCCTACGCTCCCCCAGACCTACTACTACTACTACTACA
AGCAACTTGGATGTTACCACACCAAGACTTTTAGCTTCCTCCAGCTCTGTCCTGGACCGGTCGGAGTCATCTGTGTCACATCATTC
AGATGATGAAGCACGCCAGTTCTGGAGTCACCAACTTCCTGATGATTTAACTCCAGACTTCAAGCTGATGACCACTCAAGATGACA
ATTCCTATGCTTCTGGGAGTCTGTCACTAGCTAGCTTGTCCTTGTATGAACCTGAAAACTTTCCTCGTGCTAGCGGAGGTGGAGGA
GGAGGAGGAGGAGGGTTTGTGTTTTCTGACCAATCTGGATTAGCTCCACATAATGGGCATAACCTGTCGGACAAGAGTAGATATCC
CATCTCTTCTTCGTTCGGGGAAGATCAGAGTTTCAGTCCAAAGCCCTGGGATAAGCAGATTATGAATGAGAGGGAGAGAAACCCTT
TTGGCCGGTTCATGATTCCCGAGAATCCAAATGTAGGGGAAATGGAGGTGAACCCTGTGGAGTTTCTTGCTTCTCAGTTCCCTGGA
TTTGCTGCTGAAAGTCTTGCAGAAGTTTATTTTGCTAATGGGTGTGATTTGCAGTTGACAGTTGAGATGCTTACTCAGCTTGAGCT
ACAAGTGGATAATGGTTTGAATCAGAACATGAGGCCTAAGATTCCTGCTCCTGCTCCTAATCTAACTCCCATGGATTTTCCTGCCC
TTAGCATCTCAAATAGGCCTACTGCACAGTTTGGTGGGGATGATATGCAACAAACAGGAAATCATTACCAATCTGCTGGAAAGGAT
AATATGTTTTTCTTCAAGTCAGTTCCTCAGCCTGGTTCAGTCGATTATGTTTCTGCCGTCAAGAAGTTAGCATCCCAAGACACTAC
TGGGTTGTGGAAATACGAAGGAAACGATTCAGGAGACTCATCTATTGGCTCAAGCAGAAATTATCATCCTGGGAGGAGTATATATT
CTGATAAGCTGCTCACTCAATCCCCAAACCGACCTGCTCCTGTCGCCTGGCTGGAGACCGGGGACGCAGTTGGTAATATGTATTCT
GACTTGCGCGAGGAAGCACGTGACCATGCGCGTCTGCGGAATGTATACTTTGAACAGGCACGGCAAGCATACCTTGTGGGGAATAA
GGCCTTAGCTAAAGATCTAAGCGCCAAGGGACAGATGCATAACATGCAGATGAAGGCTGCTCATGGGAAAGCTCAAGAAGCCATTT
ATCGTCAGAGGAACCCGGTGGGTCAAGGGAACAGTAGAGGGAGCGAAAGAATGATTGACTTGCACGGGTTACATGTTAGTGAAGCA
CTCGAGGTGTTGAAGCACGAACTGAGCGTGTTGAGGAGCACAGCTAGAGTAACACAAGAGAGGCTTCAGGTTTACATATGCGTTGG
GACTGGTCACCACACAAGGGGTTCCCGCACAATGGCCAGACTCCCAGTTTCTGTACAGCGCTACCTACTCGAAGAAGAAGGCCTTG
ACTTTTCCGAGCCTCAGTCTGGTCTCCTTAGAGTCATCATATACTGACCAGGTACCTCTTATATAGGAACCCAGCGATACACAACC
GGAAAGGAAAACCAAAAAAAGAAGAAAAAACGACCACGCTATTCATTTTGTTGTATCTGTTCTGTACATGGGAAGGCAAGAAGAAG
GAAGGCTTATATGCTAAAATGTTTTAGGTTTGTTAAGAAAATACTTTTTGTAGCATTAGAGGATCAACCAGACCTCTTTATCTGTT
TTTTTGTGGGGCTTTATGTGATGTTTTGTTGATTCTCTATGCTTTTACAGTTTTACTGTTATATACACTCCTTTCTTCAAGAAATG
CTTATATTTGTAGTCTCTAAAA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_180196 CTC-interacting domain 7 protein [Arabidopsis thaliana] | 1512 | 3e-165 |
| BAF00529 hypothetical protein [Arabidopsis thaliana] | 1508 | 1e-164 |
| XP_002880772 hypothetical protein ARALYDRAFT_481487 [Arabidopsis lyrata subsp. lyrata] | 1495 | 3e-163 |
| XP_002516159 pentatricopeptide repeat-containing protein, putative [Ricinus communis] | 1217 | 5e-131 |
| XP_002309456 predicted protein [Populus trichocarpa] | 1194 | 2e-128 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9UTP4 Smr domain-containing protein C11H11.03c | 134 | 8e-007 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O64843 At2g26280 | 2045 | 4e-227 |
| Q0WQS0 Putative uncharacterized protein At2g26280 | 2041 | 1e-226 |
| B9RQZ0 Pentatricopeptide repeat-containing protein, putative | 1217 | 4e-131 |
| B9HCQ2 Predicted protein | 1194 | 2e-128 |
| B9IKF3 Predicted protein | 1191 | 4e-128 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G26280.1 CID7; ATP binding / damaged DNA binding / protein binding | 2046 | 1e-229 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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