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Information for unigene UN47428

FASTA Sequence
Unigene ID: UN47428Length: 952 SSR 
CCATAATTGAGAGACTAATCAGTGCACATTAGACTCTAATTACACAAATAAAACTGTATCCAAAACAATACACAGGCTTACAAAAA
AAACAAAGCAAAAAATGTAGGAGTATTGTTTTGTCATCTTCGTGGCACGTTCAAAGGTTTTATTTTCTCTGGTCTCATCTCCTCTG
TTCTTGGAAGATTTATTTAGCCAAGAAGGGGTCACCACCATACATCGAGTTAAAACTCGCTTTTAGTCTCGTGAACGTACAAACCA
GAGGAAAGACAACAAGCAGCTACTCTTTTTATCCCTTATGCTGCTTAGGCTCCTGTTGCTATTGCTACTACCGCTCCTCTTTGTGC
TCTCACTACCCCTCGACTCAGACAACCTATTCCACCACTCTCTATCCTCTGTTTTCACAGACTCATCAGAGATCGAAGGTCTCGGC
GAAACCTGAGAATCTTTAACAGAATCCTTCCCCTTTCTCTTCTTCTTCTTCTTCTTCTTTTTCGCCGTATCTTTCTTTGATCCAAA
GCTAAACGGAAACATCATTTTCAGAAGAAACCCACCGTTGTTTACACTCGGATCAGCCCGTTTACCACTCTTAGTCTTCCTCACAA
CCTTACCTGTTCTCTGAGTCAACTCATCGAAGATCTTCCTGTCGTTATTCTCTTCGTTTCCCCTCGCTTCTACAAGATCCCTCAAG
GAAAGCTCGTAGCACGACTCTGGCATCTTACTAACCATCTCCATAAGCTCCCGTTGTCCACGAGCGATAGCCTGAGCCTTCGATCC
GGAGAAAGGCTGGAGTAGTGTTCCGGCCGGTGAAGAGGACCCCTCGGTGGGCTTGTGCTCCACAGAGTAGGAGAACAGACGCCGGA
ATCTGAGTGATCATTGGGAACAGTTGGGAAACTCAAGTGGTGACTGTAGGTTTCAGCTGAAGGATCAAACATATCAATCTTGCAAG
AACCCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002893161 hypothetical protein ARALYDRAFT_472375 [Arabidopsis lyrata subsp. lyrata]5504e-054
NP_173561 embryo defective 2170 [Arabidopsis thaliana]5291e-051
XP_002862501 hypothetical protein ARALYDRAFT_497423 [Arabidopsis lyrata subsp. lyrata]4098e-038
NP_177824 uncharacterized protein [Arabidopsis thaliana]3945e-036
NP_001154473 uncharacterized protein [Arabidopsis thaliana]3945e-036

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q52K83 At1g213905297e-052
O49284 At1g769803943e-036
B9GTQ4 Predicted protein3308e-029
A5C140 Putative uncharacterized protein3057e-026
B9S2P7 Putative uncharacterized protein2402e-018

Arabidopsis top hits (Blast detail)Scoree value
AT1G21390.1 emb2170 (embryo defective 2170)5294e-054
AT1G76980.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: emb2170 (embryo defective 2170) (TAIR:AT1G21390.1).4417e-044
AT1G76980.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: emb2170 (embryo defective 2170) (TAIR:AT1G21390.1); Has 33 Blast hits to 33 proteins in 14 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 7; Plants - 14; Viruses - 2; Other Eukaryotes - 4 (source: NCBI BLink).3978e-039

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
93  100%

Unigene MembersMember information