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Information for unigene UN47440
| FASTA Sequence |
| Unigene ID: UN47440 | Length: 1029 |
SSR | | GGAGATCTGTCCGTCTTCTCAATTACTCCGTCGTCGCAGTGATGAGTAGGAGATACAGTCCGCCTTATTACAGTCCTCCGAGGAGA
GGATACGGTGGTCGCGGCAGAAGCCCTCCTCCTCCTCCGCGACGTGGATACGGTGGTGGTGGTGGTGGTGGTGGACGTAAGGGATC
TAGCCATGGAAGTCTCTTGGTTCGAAACATTCCTCTCGATTGCAGACCAGAAGAGCTTCGTGTTCCCTTTGAGAGGTTTGGACCTG
TTAAGGATGTCTATATCCCCAGAGACTATTACTCAGGGGAACCTCGGGGAACCTCAAAGAAGCATGAACAGAAGAGTATTTGGTGG
AAGAGAGATAACCGTGGTTGTTGCTTCAGAGTCCAGGAAAAGACCTGAGGAGATGCGTGTGAAGACTAGGACTCGTAGCAGGGAAC
CTTCTGGCTCTAGAGGTCGTTCTCATGGACGGTCTCGTTCACGTTCAATCTCTAGATCACGCTCTCCCCGTCGTCCATCGGATTCT
AGAAGCAGACGCCGATCAAGGTCTTACTCTCCTGCACCTAGAAGAAGAGGAGCAGACTATTCAGCATCGCCAAGGAGAAGACAAGA
GGAACGTCCACGATCACCACTAAGAAGTCCTCCTCGAGGAGAAGGAGATGCAAAATACAGTCGCAGGTCCTATTCCCCTGGCTATG
AAGGTGCTGCTACTGCTGCTGAAGACCGAGACACAAATGGAGACAATGAGACTAGAGAGAAACTGGACTATGAACCAGAGGAAAGG
CGTCGTGGTGGAAGAGAGGTTTCAAGGTCTCCGTCTGGATCTAGGTCCAGATCTGTGGAAGCGTCTCCAAGATGAAACTTGTGTTG
AAGAAAGATTCTCTTTCCCAGAACAAAACTTTGTGCAACTCCCTCTATGGTGTTTCTTTGTTTCTCTAGTAGTGAACTCTCTGTGT
GCTCAAGAAACTCCTTTACTCTGGCTTGTTAAAAAGATTCATCTCGTCATGTGATGATTTTTAATATCATTCTCAGTTTGTTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| CAB75904 putative RNA binding protein [Arabidopsis thaliana] | 507 | 4e-049 |
| XP_002876304 hypothetical protein ARALYDRAFT_485973 [Arabidopsis lyrata subsp. lyrata] | 489 | 5e-047 |
| NP_567021 SC35-like splicing factor 30 [Arabidopsis thaliana] | 468 | 1e-044 |
| CAC03602 SC35-like splicing factor SCL30, 30 kD [Arabidopsis thaliana] | 459 | 2e-043 |
| XP_002533150 serine/arginine rich splicing factor, putative [Ricinus communis] | 391 | 1e-035 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8BTI8 Serine/arginine repetitive matrix protein 2 | 174 | 7e-012 |
| Q9UQ35 Serine/arginine repetitive matrix protein 2 | 166 | 6e-011 |
| Q23121 Probable splicing factor, arginine/serine-rich 1 | 153 | 2e-009 |
| Q8CGZ0 Calcium homeostasis endoplasmic reticulum protein | 152 | 3e-009 |
| O22315 Pre-mRNA-splicing factor SF2 | 150 | 5e-009 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9M2T3 Putative RNA binding protein | 507 | 3e-049 |
| Q8L3X8 Putative RNA binding protein | 468 | 1e-044 |
| Q9FYA9 SC35-like splicing factor SCL30, 30 kD | 459 | 1e-043 |
| B9T4I1 Serine/arginine rich splicing factor, putative | 391 | 8e-036 |
| C5Y8K9 Putative uncharacterized protein Sb05g027700 | 343 | 3e-030 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G55460.1 SCL30; RNA binding / nucleic acid binding / nucleotide binding | 468 | 5e-047 |
| AT3G13570.1 SCL30a; RNA binding / nucleic acid binding / nucleotide binding | 232 | 1e-019 |
| AT1G55310.1 SR33; RNA binding / protein binding | 222 | 2e-018 |
| AT1G55310.2 SR33; RNA binding / protein binding | 222 | 2e-018 |
| AT5G18810.1 SCL28; RNA binding / nucleic acid binding / nucleotide binding | 192 | 5e-015 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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