RadishBase

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Information for unigene UN47467

FASTA Sequence

Unigene ID: UN47467	Length: 1735	SSR
GGAAAAGTAGCCGCCTCATCTTCATCGTCTCACCTCCTTGGCTCTCTCTCTCTCGATGGGATGCCCGATTTAAGGGTTTCGTTCGA TTTATCTATCGATTTGACCATCGCCACAACGCTCTAGACTCTTCCTGTTTTAAAAGACAGTTTCTTTTTTGAGAATTATTATGCCT AAAGAGAGGAAAGACCGATCTGTATCTCATGAAAGGTTAAGAGCATCATCATCGCCTTTGTATTGTGAGTCAAGCCGTGCTTTGAA GAAGCCTAGTGAGAAGCAAGTTAAGGAATGGGAAGAAGCTCGTTGTCCTGTCTGTATGGAACATCCTCACAACGGCATCCTTCTCA TTTGCTCTTCCTTTGATAAAGGTTGCCGTCCTTACATGTGTGGTTGGCTTACGGTGTTCTTCCTCATCCGTGTGTTTAGACCAGAA TCGAGTGGTGGTGGATCAAGGAGTAGTAGCTGGTCTGGGACGTCTAGAGCTAGGTCTCATATAGGTGTGAGGAGAAGATCTTCAAG GCTTTGGGGAGAGAGCTATGAAGGTGATACGGGAACATCATCTAGAGATAGAGATGAAGAGAACAACAATCAATCTTCTGATGAAC AAGAGTCTTCTAGACGTCGTGTACGTAGAAGAGCTTTCATCGCTGATGATGATGATGATGAAGAACCTTGATGACTCTTTGGTGTT TATGCAAAGAAAATGGTGGAAACTTTGTAGTAATAATGAAACCTATTCTGTAAAATTTTGTTGAAGATTTGAGAAAAAGCTTATTT TTTTTAATTGAGAAACAAAATGTTCAATAATAATTTTTACCATTTTACAAAACCTTTACAACATTGAAAAGCTTGAAAAATGAACA TGTTTAAGCAGAAGTAGCTGGTTCTGAAGAAGCTGCTGCTGCTGCTGCATCAGCTCTCTTCTTTGCAAAGTATTCATCAGCACGTG CAAGGTTCTTTGCAACTGAAGGCTTCACCCATTTCTTTCTTCCGGGCAGCACTGTGAGTGTACAACCTGAAGCTTCGAGCTTCTCT TTGGCTGATGTTGAGAATGCACGAGCTTTGAAGTTGAGCTTCACGCTTAGTTCTCCAGTACCAAGAATCTTAAGAGGGAGTTTCCT TTCCCTTCCAGAAGGATTGATCAAACCCTTTAGCTTCAAAGTCTCTAGTGACACTTCATCTCCATCTTCAAACCCAGCTGTTTCAA TGTCTTTAAGATTAACTGGTACGTACTTAGGTAATCCTGAACGCATACCTCCGGCGATTCCTCGAAGTTTGGGAAGACGGCGATAA AGAGCGGTTTGACCACCTTCAAAACCTCTCATGATTCCAGGACCAGATCGTGACTTCTGACCTCTCATCCCGAAACCACAGCTCGC TCCTTGTCCTGCAGAGATACCTCTACCTTTCCTCTTCGCCCTCTTCCTCGACCCAGGTTGTGGTCCCAGATTATCCAGACGGAACC TCTCTGACGCTGCTGGAGAAGAAGAAGAAGAAGAAGACGACGTTTGGTTGAACACAACAAGGGGTCCCGTTCGACGCTTGTGGTGG AGTTTCAGAGAAAGAATGTGACGTGGGTTTGCTCCTAAGACGCTCACATTTCCCTTAAATGAAGTGGAAGGGAAGCAGGGGCGGGG ACATTGGCGGGAGATGGGAAGATTTGTTGAGATAGAGAGTGGAACAGCCATGGAGGGCACACACCAGCAGATGAAAAGCTTAGAAG ATAAGGTCGACGATC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002876939 hypothetical protein ARALYDRAFT_484358 [Arabidopsis lyrata subsp. lyrata]	1096	4e-117
NP_189221 50S ribosomal protein L15 [Arabidopsis thaliana]	1092	1e-116
CAA77593 Plastid ribosomal protein CL15 [Arabidopsis thaliana]	1084	1e-115
CAA77592 plastid ribosomal protein CL15 [Arabidopsis thaliana]	1068	8e-114
XP_002279311 PREDICTED: hypothetical protein [Vitis vinifera]	915	4e-096

Swiss-Prot top hits (Blast detail)	Score	e value
P25873 50S ribosomal protein L15, chloroplastic	1092	5e-118
P31165 50S ribosomal protein L15, chloroplastic (Fragment)	849	8e-090
Q2JV94 50S ribosomal protein L15	272	6e-023
P31160 50S ribosomal protein L15	271	8e-023
Q5N0U8 50S ribosomal protein L15	271	8e-023

TrEMBL top hits (Blast detail)	Score	e value
B9T052 50S ribosomal protein L15, putative	910	1e-095
B9HJ33 Predicted protein	889	3e-093
C6SYC0 Putative uncharacterized protein	874	2e-091
A9NYS3 Putative uncharacterized protein	802	4e-083
B4FUZ9 Putative uncharacterized protein	794	3e-082

Arabidopsis top hits (Blast detail)	Score	e value
AT3G25920.1 RPL15; structural constituent of ribosome	1097	1e-119
AT3G25910.1 zinc ion binding	316	4e-029
AT1G15430.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G80220.1); Has 144 Blast hits to 135 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).	178	4e-013
AT1G15430.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G80220.1); Has 144 Blast hits to 135 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).	178	4e-013
AT1G80220.1 zinc ion binding	162	3e-011

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	5			100%

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