RadishBase

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Information for unigene UN47473

FASTA Sequence

Unigene ID: UN47473	Length: 1251	SSR
ATTACCAAACACAAACCATTATGTTTTACCCAAAATTAAGGAACAAAGCTTATTACTAGCTAGTCTCCACTGAACCAAAAATAACA AAAGCAAAGCCAAAACTAACACTCGGATAGAGACGGATACACAAAGATACAGACTCCTGTAGTTCTGTCATCTGAACTCTCTCTCT CCGGGACACATAAATAAACAGACAGTCATATATGATAATGAAGGGTACCGGTAGCACCCGAGTAGGACTAGGATGGGATGGGATGG AGATGGAGATGGAACCTTCAAAAGCCTTCTTGTTTGAAGAAGGGAAGTGTGGTTAAGGTGAGATGAGTTTTGTTTTTATTTAGTCC CTTGTCTTGGCTCTCTTCATGCCGAGGCTATTATTGTAAGGAGAGACGGAACCAGACATTGGAGATGGAGACCCTTCTTCTCTAAG ACTACCGTTGAGAAGCGCCAGTTCCCTTAGCTGTTGTTTCTTGTAGAAATCATGCGTCTCCTCCACTGGAGTAAGTAGATCGGCTA GGATTTCACGAGCTTGCATGAGACGTGCATCCACTATCTCAATGGGCAACTCTGCCTCCACTAAGATGTGGAGCTGTTCATTCAGG TGCTCATACCCTGGTTTCCCTCTCATCATTTCCTCCTTGACTGGGTCTTTAATGCTGCCTCTCCCCCTGATCAGAACACGGCATTC AGAGCTCGCTTCAACTCGTTTTAGGGAGTTTCCTCTAGGTCCCAAGAGGCGTCCAACAAAATTGTAGTTTGGATACTTGTCGACTG GAATATCCACCCTGATTGATCGTTTTACAATGAGACCGGACGAGCTACCAGGAGAGTTTAGCCAATTTGGTGCTGGAGATGATGAA AGAGATCTCTTGGTTCATGAGACGGAAGAGATGTGGGAGCACAGGCAAGAAGGGAGTAAGCTTGTGGCGCTCTGCGAGTAATTCAG AAAGATACTTTTCTTGCTCAACGAGGAAAGAAGGTTGTGATCGGAGACCACCAGAGAAGTTTGGTGACTGAGGAGCCGACGGAGGC ACGGAAAGAGGCGGCGGATACGTCATAAATCTCCCTCCTCCACCACCATCCATACCGAGTGAAGTCATCATCATCATCAGGACGTC TTCTTATTCCTCAGCTGCTTGTTACCGGGCTTTATAACAGTTAACAGCTATAGGAGGAGAGCTAGGAGGTGTTTGGTGGCGGCGGG ATCAGAGGAGGATGAGAGAGGAAGTGAATCTCGCACACACACGTCCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
AAM14070 unknown protein [Arabidopsis thaliana]	812	2e-084
CAA18222 putative protein [Arabidopsis thaliana]	812	2e-084
NP_194378 RNA-binding KH domain-containing protein [Arabidopsis thaliana]	812	2e-084
XP_002867563 KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]	809	5e-084
NP_200425 RNA-binding KH domain-containing protein [Arabidopsis thaliana]	787	2e-081

Swiss-Prot top hits (Blast detail)	Score	e value
Q0WLR1 KH domain-containing protein At4g26475	812	1e-085
Q9FKT4 KH domain-containing protein At5g56140	787	8e-083
Q8GYR4 KH domain-containing protein At3g08620	562	1e-056
Q9ZVI3 KH domain-containing protein At2g38610	556	5e-056
Q8GWR3 KH domain-containing protein At1g09660	520	7e-052

TrEMBL top hits (Blast detail)	Score	e value
B9GHJ4 Predicted protein	749	3e-077
B9N5K8 Predicted protein	748	4e-077
A9PGC0 Putative uncharacterized protein	746	7e-077
B9T3W9 Nucleic acid binding protein, putative	732	3e-075
C5XZS7 Putative uncharacterized protein Sb04g029520	693	1e-070

Arabidopsis top hits (Blast detail)	Score	e value
AT4G26480.1 KH domain-containing protein	817	2e-087
AT5G56140.1 KH domain-containing protein	792	2e-084
AT3G08620.1 KH domain-containing protein	567	2e-058
AT2G38610.1 KH domain-containing protein	556	4e-057
AT2G38610.2 KH domain-containing protein	556	4e-057

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	1			33%


11	1			33%


6	1			33%

Unigene Members	Member information