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Information for unigene UN47475
| FASTA Sequence |
| Unigene ID: UN47475 | Length: 972 |
SSR | | GGACAATAATTAATTACACATTAATAATTAAATCAATCGCAGATAAAAACACACACACACACACAAAAAACAGAGGAAACAGAGAA
GATATGAAGGTAAAAGGGAAGAGAATCTGAGCCCTAAGGATTGTTATCACTAGGAGGAAAACGTGGGAGATAAGGTATCCAAGTGG
TAGGATCTCTCCAATCAAACGCAGGAAATGATGCATTAGGGTTTCCTAAAGGAAGAAAAGGGAAAGGGAAAGACGGAAGCGGAGGC
AGAGTAGGCAACGGTGGCAGAGTAGAGTACGGCCAAGGGAACCAGTACGGTGGCATGTAAGGCCAGAAGAGCTTCGAATCTCTCAA
CTTATTCTCCACCTTCTCCTCTCGCTGGTGGCGATGTCTCTTTCCGCCGCTGCAAAGTGTGGTGTTTCTGTGGGAAGGTTTGTAGC
TGAGTGCGCTTAAGCTGTAGATACAGACACGATCTTGCTTCGACTTGATAGATACTTCGTTGGCTGCTGTCTGAAAAACGGGGATG
TTGCAGCCGACGTTGTTGTCGGAGGAGGGTTTGAGCAGCTTGGCGCTGCACTGAGACGCTATGGCTATTCCGTCGACGCAATCTAT
CCCGTCGACGTGAGGGATGTCGAGCTTGTAAACACCGTTTATGTTTGTTGTTCTGTTCACCGATATGTTCACTTCCTCTGTTGTTT
TCGGTGAACTCGCTTTGAATCTACAGCTCACATGAACTTCCACTCCTTGTAAGAAATAGCTCTGTCTTGAGAAAGTGTTGATTGCA
CAAGTGTCGCAGTAGACAACTCCGACGACTGTGATGCGAGAAGAAGGGTCCGAGCTTCCTCCCGGTGGTGAAAGGCCACGACCACG
GCCAAAAGCTTGATGTGACAAGCTAGGAGCTAGAAGGAGAAGACAGAGAAGAGGAAGATACATTGTGGCTAATCTCTTTTCACTGT
CTCCCTATTCTCTTTCTTGATGATCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002873600 hypothetical protein ARALYDRAFT_488130 [Arabidopsis lyrata subsp. lyrata] | 1197 | 4e-129 |
| AAM62468 unknown [Arabidopsis thaliana] | 1189 | 3e-128 |
| NP_196818 Pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana] | 1187 | 5e-128 |
| XP_002299330 predicted protein [Populus trichocarpa] | 628 | 4e-063 |
| XP_002514867 hydrolase, acting on ester bonds, putative [Ricinus communis] | 583 | 6e-058 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8LEU2 Putative uncharacterized protein | 1189 | 2e-128 |
| Q9FY96 Putative uncharacterized protein At5g13140 | 1187 | 4e-128 |
| B9GMP5 Predicted protein | 646 | 2e-065 |
| B9RM98 Hydrolase, acting on ester bonds, putative | 583 | 4e-058 |
| B9GZC8 Predicted protein (Fragment) | 563 | 8e-056 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G13140.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen and extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26960.1); Has 90 Blast hits to 85 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | 1188 | 2e-130 |
| AT3G26960.1 unknown protein | 346 | 7e-033 |
| AT5G41050.1 unknown protein | 341 | 3e-032 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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