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Information for unigene UN47531
| FASTA Sequence |
| Unigene ID: UN47531 | Length: 1074 |
| SNP | GGGTCTCTGCTTTCGAGGAATTAGGGTTTTGAAGCAAAATCACGAATCAGAATCTCATCTTCGCCGCTCTCTCACTGACTGACAAA
AATTTTGGCAGTTGGTAGAAGATATGTCGGAAGAAGTGGAGTACCGGTGCTTCATTGGTGGGCTTGCGTGGGCAACGTCTGATCGT
GGCCTCAGAGATGCCTTTGAGAAGTATGGTCACCTCACTGAGGCTAAGGTGGTTCTTGACAAGTTTTCTGGGCGTTCACGTGGTTT
TGGGTTCATCACTTTTGATGAGAAGAAAGCTATGGATGAAGCCATTGCGGCAATGAATGGGGTGGATTTAGATGGGCGGACTATCA
CTGTTGATAAAGCTCAGCCACAGGGTGGTGGATCCGGCAGGGATCATGATGGTGACCGCAGTCGTGATCGTGATCGTGATCGCGGG
TATGACCGTGACCGTAGCCGTCCATCTGGTGGTGGGAGAGGTGGTTCAGGTGGCGGTGATTGCTTTAAATGTGGCAAGCCTGGACA
TTTTGCGAGGGAGTGTCCTGATGAATCCGGTAGAGGTGGTGGTGGGGGAAGGTACAGCTCGAGAGATGATAGGTACAGCTCTAGGG
ATGATAGGTACGGTGCAAAGGATGATAGGTATGGTGGAAAAGAAGATAGGTATGGTAGGGATCGGTATGGACCTGATCGCAGTGGG
GAACGCTTTGGTGGAGGACGTAGCAGGGATGATGGCAGCCGTGGGGGTTCAGGAGGTGAGAGGCATGGCCGTGCTCCATACGATCG
CCCCAGAGACTAGAATTCTTCTCCAGAGGTCAAACAAGTGGAAGGTTTCTGCTTTTCAGCTCTCATCAAGCGGGAAGTTAGATGGT
CTGCTTTGTTGAATGTATTTGGATAGCTCGAGAAAGAAGAATGTGTATCTGTTTTGGCACCTTAAACTCAAGAGTCGGCTAATGTC
CTAAGTACTCTCCTTTTGATATGTTGATCCTTTGGAAACCTTGTGCTTAGTTGGTTTGAGATTGAGAGACACAAATGTGCTACTTT
AAGCTTATCGTAATGAATGAGTTGGTTATCCCCAACACCATA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| BAJ34585 unnamed protein product [Thellungiella halophila] | 871 | 3e-091 |
| XP_002875318 predicted protein [Arabidopsis lyrata subsp. lyrata] | 706 | 4e-072 |
| NP_189273 RNA recognition motif and CCHC-type zinc finger domain-containing protein [Arabidopsis thaliana] | 697 | 4e-071 |
| BAA12064 RNA-binding protein RZ-1 [Nicotiana sylvestris] | 687 | 6e-070 |
| XP_002523766 dc50, putative [Ricinus communis] | 681 | 3e-069 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q03878 Glycine-rich RNA-binding protein | 352 | 2e-032 |
| Q03250 Glycine-rich RNA-binding protein 7 | 352 | 2e-032 |
| P49310 Glycine-rich RNA-binding protein GRP1A | 339 | 6e-031 |
| Q43472 Glycine-rich RNA-binding protein blt801 | 339 | 6e-031 |
| P49311 Glycine-rich RNA-binding protein GRP2A | 329 | 8e-030 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LIN3 AT3g26420/F20C19_14 | 697 | 3e-071 |
| Q42412 RNA-binding protein RZ-1 | 687 | 4e-070 |
| B9SCP7 Dc50, putative | 681 | 2e-069 |
| D0V0M9 RNA-binding protein RZ-1 | 665 | 1e-067 |
| Q9AXN2 RNA-binding protein | 630 | 2e-063 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G26420.1 ATRZ-1A; RNA binding / nucleotide binding | 697 | 2e-073 |
| AT5G04280.1 glycine-rich RNA-binding protein | 379 | 1e-036 |
| AT2G21660.1 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded DNA binding / single-stranded DNA binding | 354 | 9e-034 |
| AT2G21660.2 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded DNA binding / single-stranded DNA binding | 351 | 2e-033 |
| AT4G39260.1 GR-RBP8; RNA binding / nucleic acid binding / nucleotide binding | 319 | 1e-029 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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