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Information for unigene UN47531

FASTA Sequence
Unigene ID: UN47531Length: 1074  SNP
GGGTCTCTGCTTTCGAGGAATTAGGGTTTTGAAGCAAAATCACGAATCAGAATCTCATCTTCGCCGCTCTCTCACTGACTGACAAA
AATTTTGGCAGTTGGTAGAAGATATGTCGGAAGAAGTGGAGTACCGGTGCTTCATTGGTGGGCTTGCGTGGGCAACGTCTGATCGT
GGCCTCAGAGATGCCTTTGAGAAGTATGGTCACCTCACTGAGGCTAAGGTGGTTCTTGACAAGTTTTCTGGGCGTTCACGTGGTTT
TGGGTTCATCACTTTTGATGAGAAGAAAGCTATGGATGAAGCCATTGCGGCAATGAATGGGGTGGATTTAGATGGGCGGACTATCA
CTGTTGATAAAGCTCAGCCACAGGGTGGTGGATCCGGCAGGGATCATGATGGTGACCGCAGTCGTGATCGTGATCGTGATCGCGGG
TATGACCGTGACCGTAGCCGTCCATCTGGTGGTGGGAGAGGTGGTTCAGGTGGCGGTGATTGCTTTAAATGTGGCAAGCCTGGACA
TTTTGCGAGGGAGTGTCCTGATGAATCCGGTAGAGGTGGTGGTGGGGGAAGGTACAGCTCGAGAGATGATAGGTACAGCTCTAGGG
ATGATAGGTACGGTGCAAAGGATGATAGGTATGGTGGAAAAGAAGATAGGTATGGTAGGGATCGGTATGGACCTGATCGCAGTGGG
GAACGCTTTGGTGGAGGACGTAGCAGGGATGATGGCAGCCGTGGGGGTTCAGGAGGTGAGAGGCATGGCCGTGCTCCATACGATCG
CCCCAGAGACTAGAATTCTTCTCCAGAGGTCAAACAAGTGGAAGGTTTCTGCTTTTCAGCTCTCATCAAGCGGGAAGTTAGATGGT
CTGCTTTGTTGAATGTATTTGGATAGCTCGAGAAAGAAGAATGTGTATCTGTTTTGGCACCTTAAACTCAAGAGTCGGCTAATGTC
CTAAGTACTCTCCTTTTGATATGTTGATCCTTTGGAAACCTTGTGCTTAGTTGGTTTGAGATTGAGAGACACAAATGTGCTACTTT
AAGCTTATCGTAATGAATGAGTTGGTTATCCCCAACACCATA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAJ34585 unnamed protein product [Thellungiella halophila]8713e-091
XP_002875318 predicted protein [Arabidopsis lyrata subsp. lyrata]7064e-072
NP_189273 RNA recognition motif and CCHC-type zinc finger domain-containing protein [Arabidopsis thaliana]6974e-071
BAA12064 RNA-binding protein RZ-1 [Nicotiana sylvestris]6876e-070
XP_002523766 dc50, putative [Ricinus communis]6813e-069

Swiss-Prot top hits (Blast detail)Scoree value
Q03878 Glycine-rich RNA-binding protein3522e-032
Q03250 Glycine-rich RNA-binding protein 73522e-032
P49310 Glycine-rich RNA-binding protein GRP1A3396e-031
Q43472 Glycine-rich RNA-binding protein blt8013396e-031
P49311 Glycine-rich RNA-binding protein GRP2A3298e-030

TrEMBL top hits (Blast detail)Scoree value
Q9LIN3 AT3g26420/F20C19_146973e-071
Q42412 RNA-binding protein RZ-16874e-070
B9SCP7 Dc50, putative6812e-069
D0V0M9 RNA-binding protein RZ-16651e-067
Q9AXN2 RNA-binding protein6302e-063

Arabidopsis top hits (Blast detail)Scoree value
AT3G26420.1 ATRZ-1A; RNA binding / nucleotide binding6972e-073
AT5G04280.1 glycine-rich RNA-binding protein3791e-036
AT2G21660.1 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded DNA binding / single-stranded DNA binding3549e-034
AT2G21660.2 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded DNA binding / single-stranded DNA binding3512e-033
AT4G39260.1 GR-RBP8; RNA binding / nucleic acid binding / nucleotide binding3191e-029

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
63  38%
 
112  25%
 
102  25%
 
81  13%

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