Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN47565

FASTA Sequence
Unigene ID: UN47565Length: 952 SSR 
GACAAACATTCATACGATATATATTATGTAGTGTCCCATAATAGAAGTAAGAAATGACAACAATTAGATAGAAAAAGAAGACATAT
GAAACCACCAAATACTACTCCAAGCTCTATCTCCCCTTTGGAGATGGCTACAATGGCTCCTACACACTCACCCACACACACACACA
AATCCACAACACAAAGGAAGAAGAGGAGAGAACGCAAGAGCCGTTGGATTCAGATGGACTTACTTACAATTGCCATCCTACGGCCA
GCAGTCACTCTCTATTTCTCTCTTTCAAAAAAAAAGATAAAGTTCATATAAATAGTAGTAAGAATATATTAGTCTTTCAGAGGACG
GGGGAGAAGTTGAGGCGAGAAGTGTAAGTCGCTTTAGGAACCCAGTTTCTAGGAACGACGTCAGTGGCGGACAGTGTTCTACCGGC
GGACAAAGTGGTGATCTTGACGGAGAATGGTCCTCTGAGTGGCCCTCCAATGATGCACCAGTTGGCTCCCCATACGTGTTTCATCT
CTAACCATTCCCTCGCTCCTGCTTGGCGAATATGCATGGAGCCAATGTCGCCTTCTCCTTCTTCAAACTCGACCAGTAGAGACAAC
CAGAAATCAGTTGATCCTTCGTTCACATGGAACGCTATGTTCTGCCGTCTATATTTGCATGCCGTCCGGCGGTAAATAACGGGGAT
GAGACCACGGTTGCGAAGAGGACCAGACTCTCCGGTGATAGCCAATCGACCAAAGGCAGCGCCACTAAGATCAAAGTGAGTGTTGG
TTTTGGAGCAGCCGGGACACTCATCAGTGACAATGACAGTGACGGCTCTCCGGGAACAGATACTACTGTCCAAGCACAGAACCTTG
TAACAAGCGCCACATCCTTCACCGTTTTTGAATAGAATAGGATTCACGGCTCCAACTCTCGCATGGAGGGGCTTCACGTCCACCAA
CGTACC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
ACU86966 expansin B1 [Raphanus sativus]10495e-112
NP_567803 expansin B3 [Arabidopsis thaliana]10433e-111
AAM64784 putative beta-expansin/allergen protein [Arabidopsis thaliana]10433e-111
XP_002867458 ATEXPB3 [Arabidopsis lyrata subsp. lyrata]10423e-111
BAJ34284 unnamed protein product [Thellungiella halophila]10362e-110

Swiss-Prot top hits (Blast detail)Scoree value
Q9M0I2 Expansin-B310431e-112
Q9SKU2 Expansin-B18647e-092
Q7X6J9 Expansin-B178046e-085
Q0DZ85 Expansin-B168038e-085
Q9SHY6 Putative expansin-B25001e-049

TrEMBL top hits (Blast detail)Scoree value
C8CC40 Expansin B110494e-112
B6SHE3 Beta-expansin 310432e-111
Q8LBG2 Putative beta-expansin/allergen protein10432e-111
A8MSF9 Uncharacterized protein At4g28250.29912e-105
B9I5J2 Putative uncharacterized protein PtrEXPB3 (Fragment)9015e-095

Arabidopsis top hits (Blast detail)Scoree value
AT4G28250.1 ATEXPB3 (ARABIDOPSIS THALIANA EXPANSIN B3)10448e-114
AT4G28250.2 ATEXPB3 (ARABIDOPSIS THALIANA EXPANSIN B3)9928e-108
AT2G20750.1 ATEXPB1 (ARABIDOPSIS THALIANA EXPANSIN B1)8654e-093
AT1G65680.1 ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2)5009e-051
AT1G65681.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: sexual reproduction; LOCATED IN: extracellular region; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: ATEXPB4 (ARABIDOPSIS THALIANA EXPANSIN B4) (TAIR:AT2G45110.1); Has 1362 Blast hits to 1361 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 20; Plants - 1323; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).4515e-045

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  67%
 
121  33%

Unigene MembersMember information