RadishBase

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Information for unigene UN47566

FASTA Sequence

Unigene ID: UN47566	Length: 949	SSR
ACTGGGGGGAAGATTTGCATTCGTCTAGTTTATTACAAGTTTATAAGTGGTGGGAAGACAAGATAATGAAGATGTACATTCAATTT TAAAAGCCCTTACAGGCGAAAGTTACCAAAGCATAAACATGTTTCTTTTTTATTGCACGAGCCACCTTAATCCGACCAAACCAAAT CTACAATCACACTCTAGTTAGAGCAGCAACCCATTCTCTTAAGAACAGACCCATCTTCTTTGACGTTAATAGTCTCTCCTTTCTTT GGTAAACCAGACGAAGACCCTCCTTCTTCTTTGTTCGATCCATCCACGCTTCTCTTGCTAACTATCTTATGAATCTGAGCCAACAC TTCAGTGAAGGCGTTCTCAACGTTGGTTGCATCTAACGCAGATGTCTCCATGAAATAGAGAGACTCTCTCTCAGCAAAGTCTTTAG CTTCCTCTGTTTTTATTGCTACCAAGTGACGCAAATCGCACTTGTTCCCTATAAGCATCAACACTATGTTTGGATCCGTGTGTCCT CGTAGCTCCCTTAGCCATCTCGCTGCGTTCTCAAACGTCGAGTGTCTTGTCACGTCGTAGACAAGTAAAGCACCTACAGCTCCTCT GTAGTAAGCACTTGTGATTGCTCGGTATCTTTCTTGACCAGCAGTATCCCAAATCTGAGCTTTGACGACTTTGCTATCGACTCTGA GCGTCTTGGTAGCGAACTCGACGCCAATAGTAGACTTTGATTCGAGGTTGAACTCGTTCTTCGTGAATCTCGATAGTAGATTCGAT TTGCCGACGCCGGAGTCTCCGATCAAGACGAGCTTGAAGAGGTAATCGTACTCTTCGTCAACTTTGTAGCTAGCAGCCATGAGATG AGTTGTGAGAGAGAGAGAAGATCGAATGATTTTTTTTTTTTTTTTTTTTTTTTGGCTTTGCTTTACTGTTCTGTTTCTGATGATAA TCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_172128 Ras-related protein RABA1a [Arabidopsis thaliana]	976	2e-103
XP_002892339 hypothetical protein ARALYDRAFT_887842 [Arabidopsis lyrata subsp. lyrata]	975	2e-103
Q40194 RecName: Full=Ras-related protein Rab11D	928	6e-098
AAN03473 small GTP-binding protein [Glycine max]	900	1e-094
BAA02114 GTP-binding protein [Pisum sativum]	899	1e-094

Swiss-Prot top hits (Blast detail)	Score	e value
P28185 Ras-related protein RABA1a	976	7e-105
Q40194 Ras-related protein Rab11D	928	2e-099
Q01111 Ras-related protein YPT3	875	3e-093
Q40195 Ras-related protein Rab11E	858	3e-091
P40393 Ras-related protein RIC2	847	6e-090

TrEMBL top hits (Blast detail)	Score	e value
Q8LJR5 Small GTP-binding protein	900	7e-095
C6SX31 Putative uncharacterized protein	899	9e-095
Q08151 GTP-binding protein	899	9e-095
A5BUD1 Putative uncharacterized protein	888	2e-093
Q9SCB1 Rab11 GTPase	866	6e-091

Arabidopsis top hits (Blast detail)	Score	e value
AT1G06400.1 ARA-2; GTP binding	982	1e-106
AT5G45750.1 AtRABA1c (Arabidopsis Rab GTPase homolog A1c); GTP binding	835	1e-089
AT4G18800.1 ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D); GTP binding	812	6e-087
AT1G16920.1 ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B); GTP binding	808	2e-086
AT5G60860.1 AtRABA1f (Arabidopsis Rab GTPase homolog A1f); GTP binding	800	2e-085

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	2			100%

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