Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN47578

FASTA Sequence
Unigene ID: UN47578Length: 1139 SSR 
GGACCCCACCCAGCCGTTTAAAAGCCTATCGCATCCTCCTTGCATCGGAGACCGATCTCATTCAAAGAACACGCTCCTTCATCTTC
CTCGGCTGAATCTCTTCTTGTCTCGGTTTTACAGTTGGATTCGCATATCAGATTGAATTTTTACTCGATAACTAGCAGCAATTATG
GATGACTGGGAGGATGAGCAGCTTGCACCACTTCCAGCTAAAGTCGAGCTTAAAAGTAATTGGGATGACGAGGATGTAGATGAGAA
TGATATTAAGGACTCTTGGGAGGATGATGATGATGATGACGATGAACCTGCTCCGGTAAAGCCTGCTACTGAGAAGGCTCCTCCTA
AGAAAGCAGCAGCAGCCAAAGCTGTTGAAAAGAAGGGCAAAGCAGCCGATGTTCCCAAAGAAGCACCAAAGGAAGAAGAACCTTTG
GATCCTATCTCTGAGAAACTTCGCTTGCAGAGGCTTGTTGAAGAAGCTGACTACAAGGCAACTGCTGAACTCTTTGGAACGAAGGG
TGACGAGACAAAACTTGATGTGTTCATCCCCAGGGCTGTTGAGGTTAGTGAGGAAAGTGCGTGGTGAGGCTTTGAGGTTTCGTGGG
GCTGAGTATGAGTTCGTGTCGCGTTTGGCTTTGCTGATTAAGAGAGTGGATGGACTTGGAGATGATACGAAGATTGCTGCGAAGAT
GATTCATGATGTTCTTGATAAGTATTAGTATTACATGGGAGGTACAGGGTTGGATTCTTCGGGTTTCATCCAGAGCCTAATCGGTA
CTCATCACTCTGCTTAAACCAATTCTTGGATTTAGGGTTAATGCACTTTTCTGTAATTGGTTTTAGTGAGAAGTCTATAATGTGGG
ATACGTTTTGAGTCTGTCCATTAATGAAATTGAAGCTGGAAAAGTATGCAAGCGTGTGCGTCAAGGTCTCTTGTTTCCAGAAGATG
GAAATTTAGAACTTCATGAAATGAATTTGATATATTTTCAAAAGCTTCGCTTTGTTTTATGGTTTTTTTTTAATCTTGTCTTAACC
TCAACGGGTTCTGTTCTGTATGATGAATTGAAGAAGATATTGTAGTTCACCAAGTACATGAAAGGTGAAGAACAAACCAAATGATT
GAATCAATGATTTTTGGTGGC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_564865 Translation initiation factor eIF3 subunit [Arabidopsis thaliana]5003e-048
XP_002888479 hypothetical protein ARALYDRAFT_475711 [Arabidopsis lyrata subsp. lyrata]4663e-044
XP_002870534 hypothetical protein ARALYDRAFT_493723 [Arabidopsis lyrata subsp. lyrata]4233e-039
NP_850918 Translation initiation factor eIF3 subunit [Arabidopsis thaliana]4152e-038
XP_002519577 Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]3686e-033

Swiss-Prot top hits (Blast detail)Scoree value
Q75JC9 Uncharacterized protein DDB_G02716701757e-012

TrEMBL top hits (Blast detail)Scoree value
Q9C8D8 Putative uncharacterized protein At1g660705002e-048
Q8GRX2 Putative uncharacterized protein4152e-038
A9P9B6 Putative uncharacterized protein3783e-034
B9H3E9 Predicted protein3783e-034
B9S0Q8 Eukaryotic translation initiation factor 3 subunit, putative3684e-033

Arabidopsis top hits (Blast detail)Scoree value
AT1G66070.1 translation initiation factor-related5001e-050
AT5G37475.1 translation initiation factor-related4159e-041
AT1G66110.1 unknown protein1542e-010

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
112  50%
 
102  50%

Unigene MembersMember information