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Information for unigene UN47586
| FASTA Sequence |
| Unigene ID: UN47586 | Length: 872 |
SSR | | GTATGGAACCCTTAAATAGAACAAAAAGGAGAGACTGTTAGAAGTTATTACAGTTTTATTTGCGAGCCCTCAAATGTCACAAAACA
TAAAGAAAACGACCAACAATAGAGAGGTCTCTGCCTATATGATAAACAACACCAAACGTTGAAAAACAGAAACTAAGAAACTTCCA
CCAACACCACCAGCGACACCATATCCACCACCGCCAACGTTGCTTCCATAACCATCACCAACGGCATTGCCACCATAAGGAGAGTT
ACCTCCATAACCACCACCACCAGCATTCCCACCATAAGATGGGCCACCTCCGTAACCACCAGCTGGAGCACCGTAACCACCGCCTC
CGTAACCACCACCTGGAGCACCGTAACCATCACCTCCATAACCACCAGATGGAGCACCGTAACCACCCGCATTGCCACCACCAGGA
CCACCGAATCCTCTTCCTCCAAATCCACTTCCTCTTTCAGTTGCGTAGTTCACCCTAATTCTTCGACCATGAAGGTCCTGTCCATC
CAATTGCATGGCGTTACTAGCCTCTTCTGTAGAAGTAAATGTGACAAAAGCAAAGCCCCTTGATCTCCCAGTTTCACGGTCCACAA
TGATTTTCGCATCAACAACTTCTCCATATTTGCTAAAAGCTTCTCTTAAGCCAAACTCATCAGTGCTGTAGGAGATACCTCCAACA
AAGATTTTAGACGAAGACATGCAACGGATGCTCTGTAGCATTGAGTTGGAGGTAGTGACATGGGTGCTGGTCTGCCTAAATATCTT
TCCAACTTTACTTAAGAAAGCCATGTGGTGCGTATCAAACTCTCTAGGGTTTTAGGGAGACAATCTCTCTCTCTCTTCTCTCTGGA
AGCGTCTTTCCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002887532 hypothetical protein ARALYDRAFT_476560 [Arabidopsis lyrata subsp. lyrata] | 909 | 8e-096 |
| NP_177563 glycine-rich RNA-binding protein 5 [Arabidopsis thaliana] | 885 | 5e-093 |
| ABB97027 unknown [Brassica rapa] | 787 | 1e-081 |
| XP_002284026 PREDICTED: hypothetical protein [Vitis vinifera] | 635 | 5e-064 |
| CAN71872 hypothetical protein VITISV_038162 [Vitis vinifera] | 634 | 6e-064 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q03250 Glycine-rich RNA-binding protein 7 | 404 | 1e-038 |
| P49311 Glycine-rich RNA-binding protein GRP2A | 396 | 1e-037 |
| P49310 Glycine-rich RNA-binding protein GRP1A | 395 | 1e-037 |
| P21522 Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog | 322 | 4e-029 |
| P17816 Glycine-rich cell wall structural protein | 250 | 9e-021 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9C909 At1g74230 | 885 | 3e-093 |
| Q2V614 Putative uncharacterized protein | 787 | 7e-082 |
| A5B074 Putative uncharacterized protein | 634 | 4e-064 |
| B9RLN6 Glycine-rich RNA-binding protein, putative | 553 | 1e-054 |
| B6TR84 Glycine-rich RNA-binding protein 7 | 529 | 6e-052 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G74230.1 GR-RBP5 (glycine-rich RNA-binding protein 5); ATP binding / RNA binding | 885 | 2e-095 |
| AT5G61030.1 GR-RBP3 (glycine-rich RNA-binding protein 3); ATP binding / RNA binding | 599 | 3e-062 |
| AT2G21660.1 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded DNA binding / single-stranded DNA binding | 406 | 7e-040 |
| AT1G18630.1 GR-RBP6 (glycine-rich RNA-binding protein 6); RNA binding / nucleic acid binding / nucleotide binding | 335 | 1e-031 |
| AT2G36120.1 DOT1 (DEFECTIVELY ORGANIZED TRIBUTARIES 1) | 263 | 3e-023 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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