 |
Information for unigene UN47598
| FASTA Sequence |
| Unigene ID: UN47598 | Length: 813 |
SSR | | GGGAAGAAGTAGAGAGAGATCCATCGGAGAAGAAGAAGAGAGGGAGAGAGAGAGAGAGTCAGATTGAGAGAAACAATGACTTCGAG
GTACTGGGTGGTGTCTCTACCAGTGAAGGACTCTTCTTCCACCTCGTGGAATCGTCTTCAGGAGCAGATCTCCAAGCATTCCTTTG
ATGCTCCTCTTTATCGGTTCAACATCCCTAATCTTCGTGTTGGAACCTTAGATTCTCTTCTCGCCCTCGGCGATGATCTGCTCAAG
TCGAATAGCTTTGTGGAAGGAGTTTCTCAGAAGATCAGGAGACAGATCGAGGAGCTGGAGAGGATTTCTGGTGTTGAGAGCAATGC
TCTTACTGTTGATGGAGTTCCTGTTGATTCTTATCTCACCAGGTTTGTCTGGGATGAAGCTAAGTACCCAACAATGTCACCTTTGA
AGGAGGTTGTGGAGAATATTCAGTCTCAGGTTGCCAAAATTGAGGATGATCTCAAGGTTCGTGTCGCTGAGTATAACAATGTCCGC
GGTCAACTCAATGCCATTAACCGAAAGCAGAGTGGAAGCTTAGCTGTTCGTGACCTCTCGAACTTGGTTAGGCCAGAAGATATTGT
CGCGTCAGAACATCTCGTGACTCTCCTTGCTGTTGTTCCAAAGTACTCCCAGAAAGACTGGCTAGCATGTTATGAGACATTAACCG
AGTATGTGGTTCCTAGTCCTCGAAGAAATTGTTTGAGGATAATGAGTATGCTCTTTACACCGTCACTCTCTTTACTCGTGTTGCTG
ACATTACAGGACAGTGCCCGTGAGAAAGGGTCCAAATCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002889973 de-etiolated 3 [Arabidopsis lyrata subsp. lyrata] | 1047 | 7e-112 |
| NP_563916 V-type proton ATPase subunit C [Arabidopsis thaliana] | 1035 | 2e-110 |
| XP_002512862 vacuolar ATP synthase subunit C, putative [Ricinus communis] | 958 | 1e-101 |
| ABH07428 vacuolar H+-ATPase subunit C [Gossypium hirsutum] | 957 | 2e-101 |
| XP_002328918 predicted protein [Populus trichocarpa] | 949 | 2e-100 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SDS7 V-type proton ATPase subunit C | 1035 | 8e-112 |
| Q9SCB9 V-type proton ATPase subunit C | 818 | 1e-086 |
| P21283 V-type proton ATPase subunit C 1 | 434 | 4e-042 |
| Q4R5H9 V-type proton ATPase subunit C 1 | 434 | 4e-042 |
| Q5RDQ7 V-type proton ATPase subunit C 1 | 434 | 4e-042 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| C0SUV0 Putative uncharacterized protein At1g12840 (Fragment) | 1035 | 1e-110 |
| B9RH03 Vacuolar ATP synthase subunit C, putative | 958 | 1e-101 |
| Q0PGG3 Vacuolar H+-ATPase subunit C | 957 | 1e-101 |
| B9N0V3 Predicted protein | 949 | 1e-100 |
| Q2HUJ7 V-ATPase subunit C | 898 | 9e-095 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G12840.1 DET3 (DE-ETIOLATED 3); proton-transporting ATPase, rotational mechanism | 1035 | 7e-113 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
