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Information for unigene UN47603

FASTA Sequence
Unigene ID: UN47603Length: 1138 SSR 
GGACGACTAATTGAAAATAAGAGATGAAATACTTTTAAAAAGAGAAGAAGACAGACACCTTTACAGCCAAGAAGACGACCTTTGAA
AAAAAGCTTCCGGAGTTTATCCATCAATCAATCAATCAATCATCTTTTCGTAATCGAAAGAAGAAATGAGGCATAATTGTTGCCAT
ATTTCGTTCGCCTCAACTCTCAAGATCCTCAATTTCGTTCAAGCTTTCTTCGGTGTTTCCATCATCATCTACTCCATATGGATGCT
CGATCAATTCCACCGTCACGTCCCCGTCGATCCTCCCACTTTGAACAATCCTGCTGGTCTCATGGCGAGCGTCGTTCTAGGGTCTA
GTGGTGGTGGTGGTGATCATGGGTTTAGCCTCCGTTCCTTAGACCTTCCTGCTCCATGGTTCATCTACTCTTTTATGGCGGTTGGT
GTATTGGTCTGCATTGTTACCTTCATTGGTTTCATTGCTGCTGAAGCTATCAATACCTGTTGCTTGTGTTTCTACTCTATTCTCAA
AACTCTGCTCATTCTACTTGAAGCTGCCCTTGTTGCATTCATCGCCATTGATCGTCACTGGGAAAAGGATCTTCCGTATGATCCAA
CTGGAGAGCTCAATAGTCTTCGGGCTTTCATTGAGGACAACATTGATATATGCAAATGGGTCGGGGCTGCTGTAGTAGTCGTCCAG
CTACTGTCACTGCTACTAGCCATGGTTCTCAGAGCTATGGTTTCACCTAAGAGACCCGAGCTTGACGATGAGGAAGACTACGAGAA
CCCGAGGAGTAGAGCTTGGGATCCACTTCTTGGTTCTCAAGCAAACCAGGCTTCTGCTGGGCCTAGCAAGAGTGAAAACTGGAGCT
CTCGCATCAGAGAAAAGTATGGACTGAACCAGACTCAGGCGGTGGTGAACCCTAAAGGCTGATGATGAAGCCAAATAAACATGATT
CTGAAACTGCATGCGTCCATATGGTCTCTGTGTAGCTCTCTTTCTCTATGTTTTGCTCTCTATAACTTTCTCTTAGTGTGCTTAAA
TAGTTAACTCGACAACAGTGTCCTATTGTGTGCCACACCAACCGCATAAGCATCTCTATTTGTGTGTTTGCCTGTAGATACCTCTC
TAAATTATCATTTCCACTAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002885992 hypothetical protein ARALYDRAFT_480447 [Arabidopsis lyrata subsp. lyrata]9011e-094
AAL47370 unknown protein [Arabidopsis thaliana]8857e-093
NP_565468 Tetraspanin family protein [Arabidopsis thaliana]8857e-093
NP_194606 Tetraspanin family protein [Arabidopsis thaliana]8095e-084
NP_001190864 Tetraspanin family protein [Arabidopsis thaliana]8095e-084

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q93XY5 Expressed protein8855e-093
Q9SK78 Putative uncharacterized protein At2g20230; F11A3.228855e-093
Q9SVU4 At4g287708093e-084
A9PAK5 Predicted protein6061e-060
A9PB07 Putative uncharacterized protein6061e-060

Arabidopsis top hits (Blast detail)Scoree value
AT2G20230.1 LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28770.1); Has 91 Blast hits to 91 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).8916e-096
AT4G28770.1 FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20230.1); Has 94 Blast hits to 94 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).8092e-086
AT1G32400.1 TOM2A (TOBAMOVIRUS MULTIPLICATION 2A); protein binding3485e-033
AT1G32400.2 TOM2A (TOBAMOVIRUS MULTIPLICATION 2A); protein binding3485e-033
AT1G32400.3 TOM2A (TOBAMOVIRUS MULTIPLICATION 2A); protein binding3485e-033

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
74  100%

Unigene MembersMember information