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Information for unigene UN47628
| FASTA Sequence |
| Unigene ID: UN47628 | Length: 769 |
SSR | | GGGAGAGAGAGAGACTCAGTGACCATTTCTATAATCTACCAATCTCTCTGACGCGCTTTCTTCTCCGGTGTCTCATCGTCACGTCC
GGCGCATTTCGTGGAAGCAGAAGAGCCTATAAAGTTCCTTTTGAGATATGGACAGCTTCTGGCAATTGGGTGATGAGCTTAGAGTC
CAGACTCAGTCAAGAGCATCAGAGGATCACAAATGGTCCACTGTTGCAACCAAGCTCGCTGAGCAGACGAGGATGAAAAGCGAAGG
GTTGAACAACCTCGATCTCTCCAAAGCTGGCTACTCTGAGTTCAGACCATCCGACAAGCTTGGTTTCCACGACAACAACAACAACT
TCAACATGTTTAACAACAGCAATGTTTACAACAACATGCATGCTGTTGTTTTCCAGAAGAATGATTTCTTCAAAAGTGGAGGAGGC
AACGCGAAGGTTAACAAGTATAATGGTAATGTTGTTGTTGCTAACAAAGAGCTGAGCAAACACAACAATAGCAATGATAATGCTGT
TGACAAGAGGTTTAAGACTCTGCCTGCGTCGGAGACGCTTCCGAGGAACGAAGTTCTTGGCGGGTACATCTTTGTTTGTAACAACG
ATACCATGGAGGAGGATTTGAAGCGTCACCTCTTTGGGTTACCTCCAAGATACAGGGACTCTGTGAGGGCAATAACACCCGGATTG
CCTCTGTTTCTTACAATTACACACTCACAGCTCATGGTATCTTGAGCACACTTTGGAGTACTATATAGATGCGACTGCTTG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002875357 hypothetical protein ARALYDRAFT_484493 [Arabidopsis lyrata subsp. lyrata] | 459 | 9e-044 |
| NP_189345 DCD (Development and Cell Death) domain protein [Arabidopsis thaliana] | 450 | 1e-042 |
| AAM64572 gda-1, putative [Arabidopsis thaliana] | 449 | 1e-042 |
| ACN40727 unknown [Picea sitchensis] | 398 | 1e-036 |
| ABR18077 unknown [Picea sitchensis] | 392 | 5e-036 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LSC7 AT3g27090/MOJ10_18 | 450 | 7e-043 |
| Q8LBT1 Gda-1, putative | 449 | 9e-043 |
| C0PSD7 Putative uncharacterized protein | 398 | 8e-037 |
| B8LQZ7 Putative uncharacterized protein | 392 | 4e-036 |
| B9N102 Predicted protein | 386 | 2e-035 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G27090.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Development and cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42050.1); Has 642 Blast hits to 564 proteins in 35 species: Archae - 0; Bacteria - 2; Metazoa - 12; Fungi - 0; Plants - 155; Viruses - 0; Other Eukaryotes - 473 (source: NCBI BLink). | 720 | 2e-076 |
| AT5G42050.1 FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Development and cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27090.1); Has 5084 Blast hits to 2870 proteins in 85 species: Archae - 0; Bacteria - 24; Metazoa - 270; Fungi - 58; Plants - 157; Viruses - 8; Other Eukaryotes - 4567 (source: NCBI BLink). | 324 | 2e-030 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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