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Information for unigene UN47643

FASTA Sequence
Unigene ID: UN47643Length: 1035 SSR 
AGTTTAACAAGAAAGAGCCAAAAGAGCAACAAACAAAGTAGAGTTTAGATTCATACAATTTCAGAAGAAATCAATTCTCTGGTTTG
GAATCATCTTTTACACAACAAAAGAAAGGTCTTACACAACATTCATCTCCAGGGTGTGTAGCAGCAAACAGTCTTAAAACCAAAAC
CAAAATCATTATCCTGAAGCCAAGTAGTAACTAAACAAAAGTAACCAAAGCACAACCATCATCACATAGGTTAGTTACCAGCGTTA
GGCAAAGCAGCCATGAAGGAGTTATAAGAAGACTCAAGATCAAAGTGAAGCTGCCTAGCCTGCTGCTCAGTGAGCTCATCCGAAGC
TCCCATCTTAGACAACCTCGAAAGCCACTCTTTCATCTTAATCTTCCCTTCAAAATCCGGCGGCAAAATGCTAAGTTTCTGAAGCG
AAGCAGAGAGATCAGACAGCAACGGATACACCTGATCAACAGCCACCATGTTGAGCTTCAGAGAATCCATCGAAGTGATGAAGTTC
TGAACACACTCAGCGACAACGGAAGCAGAGCTGGATGTAGAAGCCATCGCAGCAGCACGGTGCTCCACAGTAGCAGGAACACCAGA
GGTCACGAGCCGGTAGACAGCGGCCGAGCAGTCCATCTTGTACGTCTCGGCGAACCTCTCGATGCTAGGCACCAAGTCCCTGAGCG
CGGCGGAGAGAGTCTTGAAGTGGACGATGAGCTTCTGGCACTCGGTTTCGTACTCGGATGGGGAGATGAGGTCACGGATGTAAGCC
TTCTCGAGCTTCTCGGTGGCTTTGATGATGGCGTAGAGCTCGGCGAAGTTCTCGTACATTTCTCTCTCGCGCTTATCGTTCCACAA
CTTGACCTCCATCTTTTTTTTTGACTTAACGAGAGAACTATGGAGAAGAGAATGGGACACGCGCAAAAAGAAAAGTTTCCTCCTCT
AGGAAGAAAGATTTGGGGATTTCGATGGAGGAATGGAACAAATCTCCAGATTAGAGGAGAGAGAGAGAGAGAGAGAGAGATGGGCC
CCT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAJ33668 unnamed protein product [Thellungiella halophila]10254e-109
NP_193887 vacuolar protein sorting-associated protein 28-1 [Arabidopsis thaliana]10173e-108
AAD48972 contains similarity to S. cerevisiae vacuolar protein sorting-associated protein VPS28 (GB:U39205) [Arabidopsis thaliana]9653e-102
NP_567281 vacuolar protein sorting-associated protein 28-2 [Arabidopsis thaliana]9653e-102
XP_002872726 hypothetical protein ARALYDRAFT_490145 [Arabidopsis lyrata subsp. lyrata]9611e-101

Swiss-Prot top hits (Blast detail)Scoree value
O65421 Vacuolar protein sorting-associated protein 28 homolog 110171e-109
Q9S9T7 Vacuolar protein sorting-associated protein 28 homolog 29651e-103
Q54NF1 Vacuolar protein sorting-associated protein 285465e-055
Q9V359 Vacuolar protein sorting-associated protein 28 homolog4131e-039
Q9UK41 Vacuolar protein sorting-associated protein 28 homolog4103e-039

TrEMBL top hits (Blast detail)Scoree value
B9S615 Vacuolar protein sorting-associated protein VPS28, putative9383e-099
A9PBK3 Predicted protein9284e-098
B9HYZ8 Predicted protein9213e-097
D6BR67 Vacuolar protein sorting-associated protein VPS289213e-097
A5BEL8 Putative uncharacterized protein9195e-097

Arabidopsis top hits (Blast detail)Scoree value
AT4G21560.1 VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1); transporter10189e-111
AT4G21560.2 VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1); transporter10189e-111
AT4G21560.3 VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1); transporter10189e-111
AT4G05000.1 VPS28-2; transporter9661e-104
AT4G05000.2 VPS28-2; transporter9661e-104

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
63  100%

Unigene MembersMember information