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Information for unigene UN47649
| FASTA Sequence |
| Unigene ID: UN47649 | Length: 1101 |
SSR | | GGACTCCCCCACTAAAGAAAATGTCGTCGTTAGCCTATTGTCCCTCCGCCGTCGCTGTATCTCCCGCTTCCTCCACCTCTACCTTT
AACCCCTTATTCCCCTCCCTCAGACTCTTCAATCGCTTTCCACCAAAATCCTTCAAACTCGTCGCCAGCCTCCGCAATCCCATCTC
CCTCCATTCCAATATCCGTCGCCACCGTTTCTCCTGCGCCACCGAAGACGAACTCCCCGTGGCATCAGAAGACGAAGAAGAAGAAG
AAGATGTGAAACAGACAACGCAAGCCACTGGTGAGGAAGGGAGGCTGTACGTTGGAAACTTACCATACACAATTACTTCTTCTGAG
CTCTCCCAACTTTTCCGACAAGCTGGAACTGTCGTAGATGTTCAGATTGTGTATGACAAAGTCACTGACAGAAGCAGAGGGTTTGG
ATTCGTAACGATGGGAAGCATTGAAGAAGCTGAAGAAGCTATTCAGATGTTCAACACCTCTCAAATTGGTGGTAGAACTGTGAAAG
TGAACTTCCCGGAGGTGCCAAGAGGCGGAGAGAGAGAAGTAATGAGAGCGGCCAAGATCCGTGATGGTAACCGGAGTTATGTCGAC
AGTCCTCACAAGCTTTATGCTGGGAACCTTGGTTGGGATCTAACCTCACAAGGTTTGAAAGATGCATTTGGTGACCAACCTGGTGT
GCTTGGTGCTAAAGTCGTGTATGAAAGAGACAGCGGGAGGTCTCGGGGATTCGGTTTCGTTTCTTTTGAGTCTGCACAAGACCTTC
AGTTTGCCCTGAGGGCCATGAATGGCGTGGAAGTTGAAGGCAGAGAACTCAGGCTAAATTTGGCTTCAGAGAGAGCCACCGTGTCT
CGTCCTTTTGTAACAGAAGAGGGAAGCAGTCTTGAGAGCAGTGGGATGTTTTCAAACATCAGTACATGAAGCAGCAAAACCACAAT
ATCTTTTTTGTATTCTATTGAGGCTTAAAGAAGAAGATAATTTATGAGATAAAGAACAGGAGGTTGGCTGTAGTCTTATTCAAAAA
TGTTTCTTCCATTAAATGGTGTAATATCTCTTAAATCTCATAGAAATGCAAAAAGTTTTGTCTTGACTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002876141 RNA-binding protein cp33 [Arabidopsis lyrata subsp. lyrata] | 942 | 2e-099 |
| NP_190806 chloroplast RNA-binding protein 33 [Arabidopsis thaliana] | 932 | 2e-098 |
| AAL32533 ubiquitin / ribosomal protein CEP52 [Arabidopsis thaliana] | 930 | 4e-098 |
| BAA06523 RNA-binding protein cp33 [Arabidopsis thaliana] | 924 | 2e-097 |
| CAA41253 33 kd chloroplast ribonucleoprotein [Nicotiana sylvestris] | 738 | 8e-076 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P19684 33 kDa ribonucleoprotein, chloroplastic | 736 | 6e-077 |
| Q08935 29 kDa ribonucleoprotein A, chloroplastic | 432 | 1e-041 |
| P49313 30 kDa ribonucleoprotein, chloroplastic | 426 | 5e-041 |
| Q04836 31 kDa ribonucleoprotein, chloroplastic | 408 | 6e-039 |
| P82277 30S ribosomal protein 2, chloroplastic | 374 | 5e-035 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q39061 AT3g52380/F22O6_240 | 932 | 2e-098 |
| Q8W4N7 Ubiquitin / ribosomal protein CEP52 | 930 | 3e-098 |
| Q39062 RNA-binding protein cp33 (Fragment) | 924 | 1e-097 |
| Q08948 33 kd chloroplast ribonucleoprotein | 738 | 5e-076 |
| B9H9L3 Predicted protein | 726 | 1e-074 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G52380.1 CP33; RNA binding | 933 | 7e-101 |
| AT4G24770.1 RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding | 408 | 5e-040 |
| AT2G37220.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 237 | 4e-020 |
| AT5G50250.1 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative | 237 | 4e-020 |
| AT1G60000.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 219 | 4e-018 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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