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Information for unigene UN47690

FASTA Sequence
Unigene ID: UN47690Length: 561 SSR 
GCACGAGGATTACTTCATATCTCCATCATCTGATTGGTCTAGATGATGGAGCTGAGTTCTCTCTTCCCCACCCTCTATCTCCCTGA
TCTCTTACTTTTTATAGCGCCGCTCTGGATCGCTGTCCTTGTCGGGGTATTGGTGGGTTGGCTATGGAGACCAAGTTGGGCTAGAC
AAGACAAAATCTTCACCTTCTTCAACAACAACAACAACCATAATCTCCGCGCTACTACTACCCTCGAATCTCGCCAGGTACACAAA
GAGAAATCCGGGTTTGTAACGGGCGATGATTTCAGGCATCTATGGAACTTGGTCGAGGTCAAAGACGGTGGTCCTTCATGGATTCA
GATGATGGACCGGTCTACTCCCACTTTCTCTTACCAAGCTTGGAGACGCGATCCTCAAGATGGCCCCCCTCAGTACCGTAGCAGAA
CCGTGTTCGAAGACGCCACTCCTGAGATGGTGAGGGACTTTTTCTGGGATGATGACTTCCGTTCCGAGTGGGACGATATGCTCTTG
TTTTCTTCTACGCTCGAAGTCTTGTAAAGACACTGGCATTATGGT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002886329 hypothetical protein ARALYDRAFT_892929 [Arabidopsis lyrata subsp. lyrata]4863e-047
NP_176653 Polyketide cyclase/dehydrase and lipid transport-like protein [Arabidopsis thaliana]4802e-046
AAD28760 membrane related protein CP5 [Arabidopsis thaliana]4802e-046
AAM91533 membrane related protein CP5, putative [Arabidopsis thaliana]4802e-046
XP_002317804 predicted protein [Populus trichocarpa]4407e-042

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q8L7P8 Membrane related protein CP5, putative4801e-046
Q9XF49 Membrane related protein CP54801e-046
Q9XIR9 Putative membrane related protein4801e-046
B9I215 Predicted protein4405e-042
B9I0R9 Predicted protein4111e-038

Arabidopsis top hits (Blast detail)Scoree value
AT1G64720.1 CP56116e-064
AT5G54170.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to wounding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: CP5 (TAIR:AT1G64720.1); Has 233 Blast hits to 233 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 142; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).3194e-030
AT3G23080.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14500.1); Has 247 Blast hits to 246 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 162; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).2934e-027
AT3G23080.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14500.1); Has 247 Blast hits to 246 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 162; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).2934e-027
AT4G14500.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23080.1); Has 257 Blast hits to 256 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 167; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).2872e-026

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
152  100%

Unigene MembersMember information