RadishBase

| | | |

Information for unigene UN47766

FASTA Sequence

Unigene ID: UN47766	Length: 1011	SSR
GGATTGTTCTCTAGATAGCAGAACCCTAAAACTCTCCTGTCGAATCTCTCTTTTCCTCCTTGATCAACAATGGAATTTTGGGGAGT TGAAGTTAAGGCTGGGATGCCACTTAAAGTGATGCCTCAAGTAGACCATCTCATCCACCTTTCTCAGGCAACAATCGATGCCAAAA AGGTAGAATCTGGTCTCTTGTACGTGACTATTGATTGGAAGAAACATGTCATTGGAACGCTCTCTCAAGACCACATTCCTCAGATG ACCTTTGACCTTGTCTTCGAGCAGGAGTTTGAGCTTTCTCACTCTTTGGAGAGTGGTAGTGTCCACTTTGTTGGCTACAGATCTCC CAACATCGATCAAGAGGAGGACTACCCTTCTGATTCCGAGGAGGAGGAAGTGGTTCCTGCTACTTCAACTGTCACTTCTGTTGGGA ATGCTGCTGCTGCTGCTTCCAATGTTGTCAAGGCTGCTGACTCAAAACCAAAAGCCAAGCCTGCTGAAGTGAAACCTGAGTCTGAC GGGGAGGATGAGTCTGAGGAGGAGGATGAAGAAGATGACTCTGAGGAGGAGGATGAAGAAGAGGAGGAGGAGACCCCTAAGCAGCC TGAGGAGCCGAGCAACAAGAAGAGGGCCACTGCATCTGCTTCCAAAACACCTGTCCCAGCAAAGAAGACAAAAACTGCAGTAGCAC CCACTCCTCAGACACTGAAGAGAGAAGAAGGGCGGGCACACAGCTGCACCACACCCAGCAAAAAAGGGTGGAAAGAGTCCTAACCA GAGCCCAGGTCAATCATCCGGTGGTAACAAGAAGCAAGTCAATTCTGGCAAGCAGTCTGGTTCTAACAACAAGGGCAAGGGAAAAG GAAAGGGCAGAGCCTAAGTTGCTTGTGTGAACAAATAAGTAGTTTTTGGTTTTTACTTATGTCTTAAGATTTTATCTATCATCGGA AAAGTTATCTAACTAGTTTGCAACTTTATGAATATTGCCTTGAATGATAAAGAACTTGGTCTGCT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_851056 histone deacetylase HDT2 [Arabidopsis thaliana]	560	3e-055
NP_197657 histone deacetylase HDT2 [Arabidopsis thaliana]	475	2e-045
XP_002872015 predicted protein [Arabidopsis lyrata subsp. lyrata]	460	1e-043
XP_002313645 histone deacetylase [Populus trichocarpa]	436	7e-041
ABK92949 unknown [Populus trichocarpa]	435	9e-041

Swiss-Prot top hits (Blast detail)	Score	e value
Q56WH4 Histone deacetylase HDT2	560	1e-056
Q6V9I6 Histone deacetylase HDT1	417	5e-040
Q9FVE6 Histone deacetylase HDT1	379	1e-035
Q9LZR5 Histone deacetylase HDT3	346	8e-032
Q9M4U4 Histone deacetylase HDT3	330	6e-030

TrEMBL top hits (Blast detail)	Score	e value
Q3E700 Putative uncharacterized protein At5g22650.2	475	1e-045
B9HQL3 Histone deacetylase	436	5e-041
A9P996 Putative uncharacterized protein	435	6e-041
A9P950 Putative uncharacterized protein	432	1e-040
A9P9Y3 Putative uncharacterized protein	432	1e-040

Arabidopsis top hits (Blast detail)	Score	e value
AT5G22650.2 HD2B (HISTONE DEACETYLASE 2B); histone deacetylase	562	7e-058
AT5G22650.1 HD2B (HISTONE DEACETYLASE 2B); histone deacetylase	560	1e-057
AT3G44750.1 HDA3 (HISTONE DEACETYLASE 3); histone deacetylase/ nucleic acid binding / zinc ion binding	379	1e-036
AT5G03740.1 HD2C (HISTONE DEACETYLASE 2C); histone deacetylase/ nucleic acid binding / transcription repressor/ zinc ion binding	346	7e-033
AT5G44280.1 RING1A (RING 1A); protein binding / zinc ion binding	121	9e-007

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	3			100%

Unigene Members	Member information