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Information for unigene UN47816

FASTA Sequence
Unigene ID: UN47816Length: 896 SSR 
GGGAACACCAACCAAAGAGCAATAACAATAGTAGAAATTAAACAAAATCTTGATCATCCTACAGAATTCTGGAAGTAATCCAAGAA
GAAGAAGAAGGCTCATGACAAAAGAAAATCAAATTTCTTATGATACCTTAAAAGATAAAACAAAAATCTTAGAAAACACGGGTGGG
TGGACTCATTGTGCTCTTCAAGTACAAGCACCTCACATTTTGCCAGTTTTTCTTCAAGAGGTAAACAAGGAAGTTGACGCTCATCT
GAACATTCTGGAAGATCTGCTTCTCTTCCATGCCGAGATTGCCAACAGCGACACCCATGCAAAGAACCTTCTTAAGCTGGAACTTC
ACTGTTGCCTTGGTCTCATTCACTTTGGATTCCAAAGACTCTTGGTGGCTAACAAGAGTTGGGAACTTTCCTGCCTTGTTGAGACC
AGGACCAAGAAGACGGGGAATCTGTTTAATAACAGATTCAGAAGCAAGGAAAGCATGGAACTTCTTAGCTAGCTTCTTAACAAGCT
TCTTGTTCTTGTTCAGCTTCTTAAGTGCTTCCACATCCATAGACTCTAACCCAATCTTCTCAGCCTCTTCAACGTGCTGGGCGTCA
CCGAGCATGCAAATCTTCATCTTAGGCCTAGGAATGTGAGGCAGCTTAACGGAACCGCTAAACCTCTTGTCCTTTTGAGGGTCATA
GTTCTTAAGACCAATCTGGAGCTCGATTGTCTCGGTGAACTTGCGAGGCTTTGTCTCCTTGCAGTGAGTGATGATGGACGATATCG
CCTCTCTCACGGCTTCACTCTGTAGCTTACTCATTTTGGCACTTCCTGAGAGCTACTATTCCCTCCTGAAAACAAGGTTTTATCAA
GGAACGTTCAGAATCGATGAAGAGTAATAACCGTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_197636 60S ribosomal protein L10a-3 [Arabidopsis thaliana]10738e-115
NP_563813 60S ribosomal protein L10a-1 [Arabidopsis thaliana]9886e-105
XP_002889688 60S ribosomal protein L10A [Arabidopsis lyrata subsp. lyrata]9877e-105
BAD09090 putative 60S ribosomal protein L10A (RPL10aC) [Oryza sativa Japonica Group]9742e-103
NP_565654 60S ribosomal protein L10a-2 [Arabidopsis thaliana]9699e-103

Swiss-Prot top hits (Blast detail)Scoree value
P59231 60S ribosomal protein L10a-310733e-116
Q8VZB9 60S ribosomal protein L10a-19882e-106
P59230 60S ribosomal protein L10a-29694e-104
Q9VTP4 60S ribosomal protein L10a-27501e-078
Q963B6 60S ribosomal protein L10a7472e-078

TrEMBL top hits (Blast detail)Scoree value
Q6ZJ04 Ribosomal protein9742e-103
A9NNS9 Ribosomal protein9642e-102
B7F845 Ribosomal protein9633e-102
B7FGL9 Ribosomal protein9633e-102
B8B9K6 Ribosomal protein9633e-102

Arabidopsis top hits (Blast detail)Scoree value
AT5G22440.1 60S ribosomal protein L10A (RPL10aC)10742e-117
AT5G22440.2 60S ribosomal protein L10A (RPL10aC)10742e-117
AT1G08360.1 60S ribosomal protein L10A (RPL10aA)9945e-108
AT2G27530.1 PGY1 (PIGGYBACK1); RNA binding / structural constituent of ribosome9757e-106
AT2G27530.2 PGY1 (PIGGYBACK1); RNA binding / structural constituent of ribosome9757e-106

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  67%
 
121  33%

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