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Information for unigene UN47920
| FASTA Sequence |
| Unigene ID: UN47920 | Length: 1019 |
SSR | | GGATCCAAAATCTCTTCTGTGGGTAGAATCAACTCTGTCTTAAGCCAATCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTTTGTCTCTGTGCTCAGAGAGAGAAATGGCAGTTTCAACACTAACACTTCCCTGCTTCAAACTCTACGATCAACCAACCC
TCCTCCTTCGCGGCAACAAATCATCTAACCAAACACTTCTTAGATTCAACTTGTCGCCTCCAAAGCCTCTCTTGATCTCCTCACGT
GACAACAACAGTTCTCAGCGATTCAAAGCCCTGCCTGAGACCATCGCCGTCAAACAGGACGACACAACTGCTGATGACGACAATCC
TCCTGCGACCATCAACACTAAGCTCTACTTCGGGAACCTGCCTTACAATGTTGACAGTGCAACACTCGCTCAGATCATCCAAGACT
TCGCTAACCCCGAGCTCGTCGAGGTTCTTTACAACAGAGACACAGGACAGAGTCGTGGGTTCGCCTTTGTGACAATGAGCAACGTG
GAAGACTGCAACGTCATCATTGAGAACCTCGATGGAACTGAGTATCTTGGTAGGACTTTGAAGGTGAACTTTGCAGACAAACCAAA
ACCAAACAAAGAACCTCTGTATCCAGAAACAGAGTACAAGCTGTTTGTTGGTAACTTGTCGTGGACAGTCACTTCGGAGTCATTAG
CTGGAGCGTTTCGAGAGTGCGGGGAAGTGGTTGGTGCCAGAGTTGTGTACGATGGAGACACAGGGAAGTCGAGAGGTTATGGCTTT
GTATGTTACTCCTCCCAAGCTGAAATGGAAACCGCTCTTGAGTCGCTGGATGGGCTTGAGCTGGAGGGTCGGGCCATTCGAGTAAA
CCTGGCTCAGGTGAAGAAATACTGATACCGTAAAATAACATTTTGAGATTTTCATCGTTAGAGATTATGTTTCAATTTGAACTAAA
AAAATCAATATATTTTGTATGTGTTTAAGGTTTGGTAGTAACTAATATAATCAGCACCAATCCAAATCCTTCC
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| GenBank top hits (Blast detail) | Score | e value |
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| NP_176208 RNA recognition motif-containing protein [Arabidopsis thaliana] | 1061 | 2e-113 |
| XP_002886641 hypothetical protein ARALYDRAFT_475310 [Arabidopsis lyrata subsp. lyrata] | 1055 | 1e-112 |
| XP_002528350 ribonucleoprotein, chloroplast, putative [Ricinus communis] | 720 | 8e-074 |
| CBI23720 unnamed protein product [Vitis vinifera] | 719 | 1e-073 |
| XP_002311696 predicted protein [Populus trichocarpa] | 718 | 1e-073 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P19683 31 kDa ribonucleoprotein, chloroplastic | 421 | 2e-040 |
| Q08935 29 kDa ribonucleoprotein A, chloroplastic | 407 | 7e-039 |
| P19682 28 kDa ribonucleoprotein, chloroplastic | 391 | 5e-037 |
| Q04836 31 kDa ribonucleoprotein, chloroplastic | 388 | 1e-036 |
| P28644 28 kDa ribonucleoprotein, chloroplastic | 380 | 1e-035 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9ZUJ3 AT1G60000 protein | 1061 | 2e-113 |
| B9SQT1 Ribonucleoprotein, chloroplast, putative | 720 | 6e-074 |
| A9PFU9 Predicted protein | 718 | 1e-073 |
| B9HSU2 Predicted protein | 716 | 2e-073 |
| C6TJX8 Putative uncharacterized protein | 685 | 6e-070 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G60000.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 1062 | 7e-116 |
| AT5G50250.1 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative | 406 | 8e-040 |
| AT4G24770.1 RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding | 388 | 1e-037 |
| AT3G53460.1 CP29; RNA binding / poly(U) binding | 232 | 1e-019 |
| AT3G53460.2 CP29; RNA binding / poly(U) binding | 232 | 1e-019 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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