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Information for unigene UN47940
| FASTA Sequence |
| Unigene ID: UN47940 | Length: 803 |
SSR | | CCATGGAAGAGCTAAAACCTTCGAACAATAAGATTCTTGAGCAGCTGAGACATGGCCTCGCTAGGTTCGAGCTTGTGTCCTCCCCT
AGTACTCCTTCAATCTCCTCTGCTTCCTTCTTAGGCGCCACGCAGAGCAATAGCTATGCCTTCTTCGCCAGAATCGGTTCCTCCTT
AAATGGGTCTCCGGCAGCAAAGAAGGTTGAGCAGTACGCGGTGGATAGAGTTACTGGGGATGGTCGCTGTCTCTTTAGAGCTTTGG
TGAAAGGAATGGCCTTTAACAAAGGACTTACTATCAATCCCCGGAGAGAGAGAGATGATGCAGATGAACTACGAATGGCTGTGAAA
GAGGTTATATGCAATGACCCCAAGGAAAGGGAGAAGTACAAAGAAGCTTTAATAGCTATCACTGTGGAAGAGTCTCTGAAACGGTA
TTGTCAGCGGATCGGAAGACATGATTTCTGGGGAGGAGAGTCTGAGCTGCTAGTTCTTTCCAAGCTATGTAAACAGCCAATCATCG
TCTACATACCAGAGCATGAGCATAGGAGAGGAGGAGGGTATGGGTCGGGGTTTATACCAATTGCAGAGTATGGAGCTGAGTTTAGA
GGAGGATGGGGAAAAGGGAACAAGACCAGGAATGTTGTTAGGCTTCTTTACAGTGGTAGAAACCATTATGATCTGCTTCGCTAGAC
CTGAGATGATTTAAGTTTTGTACTTCTGTTGGAATCCATGATTCCAATTTTGTTTAAAACTTGTAATGGAAAAATACTTGTAATGT
AGTTCAAACATGTTCGGTTCGGTTTGACT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_850290 cysteine proteinase-like protein [Arabidopsis thaliana] | 982 | 2e-104 |
| XP_002881560 hypothetical protein ARALYDRAFT_482809 [Arabidopsis lyrata subsp. lyrata] | 974 | 2e-103 |
| XP_002277660 PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] | 783 | 3e-081 |
| XP_002277681 PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] | 642 | 6e-065 |
| NP_001049654 Os03g0266000 [Oryza sativa Japonica Group] | 619 | 3e-062 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8GYW0 At2g38025 | 990 | 2e-105 |
| B8AKN1 Putative uncharacterized protein | 619 | 2e-062 |
| Q10NL4 OTU-like cysteine protease family protein, expressed | 619 | 2e-062 |
| C5WQ46 Putative uncharacterized protein Sb01g040060 | 605 | 8e-061 |
| A9NQ98 Putative uncharacterized protein | 599 | 4e-060 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G38025.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: OTU-like cysteine protease family protein (TAIR:AT3G57810.3); Has 100 Blast hits to 100 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 21; Fungi - 2; Plants - 69; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | 991 | 9e-108 |
| AT3G57810.1 OTU-like cysteine protease family protein | 175 | 4e-013 |
| AT3G57810.2 OTU-like cysteine protease family protein | 175 | 4e-013 |
| AT3G57810.3 OTU-like cysteine protease family protein | 175 | 4e-013 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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