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Information for unigene UN47959

FASTA Sequence
Unigene ID: UN47959Length: 996 SSR 
GGACATAACCCCCACATTCTTCTCCCTCTCTCTCTCTCTCTCGCTCCCCTTCTTCTCCGTTTCTCAATCTAATATTTCTCTCTTCA
ATTCAGTCATCGATACAGTACTTAGGGTTTCCCCTCAAACGCCGCCGATTCTCTGAAATTTGAACAATGGCCATGGACCAATCCTT
TGAAGATGCTTCTGGAGAACTCTATGGAGAAGGTGCATTTTCTTTCAACAATCCCAAGCCTGACCCAATCACAGCCTCTCTACATC
CTTCTGATGATGATACCAACGGCGATTCCAGCTTCGACTGCAACATTTGCCTAGACTCAGTTCAAGAGCCCGTTGTCACCCTCTGT
GGCCACCTCTTTTGCTGGCCCTGCATCCACAAATGGCTTCATGTACAGACCACCGATGAACAACACCAAAGACATAATAAACAGTG
TCCTGTTTGTAAATCCAAAGTCTCCCTCTCTACTTTGGTTCCCTTGTACGGACGAGGCGGTGGCAATAGTCAGGACAAAGATAAAA
CCTGTGCTGTGCCTAGAAGACCGGTTTACAAGCTTGAGATGGCGAATTCAAGTACCGATGTTCGGTTATCTCAACGGGTTCATTTC
AATAACCGGCATGATGGTTACTATCCTGTCTCAGGGGTGATGAGTTCCAACAGTTTGTCGTACTCTCCTGTTGTTATGGATCCGAT
GATGGTGATGGTTGGAGAAATGGTGGCGACGAGGCTGTTTGGAACCAGAGTTATGGATAGATTCACGTATCCGGACACTTACAATC
TCGCGGAAACTAGCTGCCCGAGGATGAGAAGACAGATAATGAAAGCCGATAAATCATTGGGAAGAATCTTCTTGTTTTTGTTATGT
TGTGTGGCTCTGTGTCTTGTACTGTTTTAGGGTTCTTCTCCTCACTAGCTTTGTCTTGCTCTTGTGAGGAAACTTAGACAAAGAAT
GTACATTTGTGTTGGTAGAAACGAATGAAAGTTGCTTCATGTCGAAAAAA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_192260 E3 ubiquitin-protein ligase RMA1 [Arabidopsis thaliana]9286e-098
XP_002872772 hypothetical protein ARALYDRAFT_911843 [Arabidopsis lyrata subsp. lyrata]8892e-093
ACU20011 unknown [Glycine max]4878e-047
AAN05420 putative RING protein [Populus tremula x Populus alba]4232e-039
XP_002869561 zinc finger family protein [Arabidopsis lyrata subsp. lyrata]3982e-036

Swiss-Prot top hits (Blast detail)Scoree value
O64425 E3 ubiquitin-protein ligase RMA19283e-099
Q8GUK7 E3 ubiquitin-protein ligase RMA33862e-036
P93030 E3 ubiquitin-protein ligase RMA22931e-025
Q6R567 E3 ubiquitin-protein ligase RMA1H12795e-024
Q5ZIR9 RING finger protein 1852581e-021

TrEMBL top hits (Blast detail)Scoree value
C6TDV9 Putative uncharacterized protein4949e-048
C6T8R2 Putative uncharacterized protein4931e-047
C6TBF7 Putative uncharacterized protein4429e-042
A9PCH2 Predicted protein4241e-039
Q8H222 Putative RING protein4231e-039

Arabidopsis top hits (Blast detail)Scoree value
AT4G03510.1 RMA1; protein binding / ubiquitin-protein ligase/ zinc ion binding9292e-100
AT4G03510.2 RMA1; protein binding / ubiquitin-protein ligase/ zinc ion binding9292e-100
AT4G27470.1 zinc finger (C3HC4-type RING finger) family protein3871e-037
AT4G28270.1 zinc finger (C3HC4-type RING finger) family protein2931e-026
AT1G19310.1 zinc finger (C3HC4-type RING finger) family protein2714e-024

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
72  100%

Unigene MembersMember information