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Information for unigene UN47980
| FASTA Sequence |
| Unigene ID: UN47980 | Length: 929 |
SSR | | GGAGGAGAAGAAAGATTGGATAAACGTCGGAGCTTGAGGAAGGGCCTATAGCCAGAGCCGCTAAAAGAAAATAAATTAAATTAGGG
CTATAAACTTTACCGGGAAGATAACTTTTGATGGCGAGGACGGGAACTGGGAAGAACGGTGCGGGGCAATTCTTCCTGGCGACGCT
GCTTCTATGGCTAGTCTCCGTCGTGTTCGAGATTGCCTTCAACCTAAGGACCGAGCTTCTCTGGGTGATCAGCGGAGGATGCTTCT
TTCAATCGGCGAATTGGTTTGTTCGTGCTTGCCTCTCTCGTGACCCTCTCTTCGTTAACACCTCCGTCTCGCTCCTACACTCAATC
ATCACCTCCGCCTCAGGTCTCTCTCCCTCTCTCTCTCTCGCTTCTATACTCTGATTAACGATGATTTTGCATTGGTTGTGTAGTGG
TTTTCATTCTGCTCAACCAATGCTTAGAGAAAGGTGTAGACGAGATGTTCGATCATTCTGAGCTCGTTGGTGGGGCTTGGAACTGG
GCACACCCTGCTCTGTGTTTCTCTTGCGGTTACTTTGCTTATGACCAGTGGGATATGCTTCGGTACCGTTTATACAGCGGCTTAAT
ACCTTCTATCCTGGTCCACCATCTCGTCCTCCTCGTTTGCTTCACTTTGGCTCTTTACCGGAACGTAACCATCAACTACCTCATCC
TTACTCTCATCTGCGAGGTACGGTTTCAAAGAACTTTATATTTGTTAGCCTTTATAGTTTCATATATGTGACATTTGTTACAAACA
GATGCATTCGATCTTTCTGCACGTGAGGAAGCTAAGGAGGATGGCGGGAATCCGTGACAGCGGCACGGCGTTGGTGAAACTGGAGT
GGGTACTAAACTGGGCAGCCTTTGTGTTTGCGAGATGCATTCCTCACATTCTCATCACTGTCAAGCTGA
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| GenBank top hits (Blast detail) | Score | e value |
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| NP_564152 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Arabidopsis thaliana] | 486 | 1e-046 |
| XP_002890465 hypothetical protein ARALYDRAFT_472418 [Arabidopsis lyrata subsp. lyrata] | 485 | 1e-046 |
| XP_002300986 predicted protein [Populus trichocarpa] | 433 | 1e-040 |
| XP_002307436 predicted protein [Populus trichocarpa] | 433 | 1e-040 |
| XP_002513758 conserved hypothetical protein [Ricinus communis] | 417 | 1e-038 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
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| Q9XHZ7 F8K7.23 | 486 | 7e-047 |
| B9GU36 Predicted protein | 433 | 9e-041 |
| B9H7F2 Predicted protein | 433 | 9e-041 |
| B9RJ39 Putative uncharacterized protein | 417 | 7e-039 |
| C6TI46 Putative uncharacterized protein | 384 | 4e-035 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G21790.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); Has 127 Blast hits to 127 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 84; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | 486 | 4e-049 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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