RadishBase

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Information for unigene UN47983

FASTA Sequence

Unigene ID: UN47983	Length: 1021	SSR
GGGACACAGACTTACTCTGTTTTAGATTCTGTACAGAGCATAGAATTATCGGTTGTTGTTCAGAGAAGAAGAAGAAGAAGACGATG GGAAGAGGAAGGATTGAGATTAAGAAGATTGAGAATGTGAACAGTCGTCAAGTCACTTTCTCCAAAAGACGTAACGGGTTGATGAA GAAGGCCAAGGAACTTTCTATCCTCTTCGACGCTGAGGTTGCTCTTATCATCTTCTCCAGCACCGGCAAGGTTTACGATTTCTCCA GCGGCTGTATGGAGCAAACCCTTTCAAGATATGGACACAGTGCTGCGTCCGCCGATCATAAACCAAAAGAAGAAGAAGAACAACTT CTACTCTGTTCTTCGCAAGAGAACGGTGCTGTTGTGTTGCGTAAAGATGATGCTATGAAGAACGAACTTGAGAGATTACAGCTTGC AATTCAGAGGCTGAAGGGTAAGGAGCTTGAGGGTATGAGTTTCTCGGATCTTATCTCTCTTGAAAACCAGTTGAATGATAGCTTGC ATAGTGTCAAGGATCAAAAGACTCAAATCTTGCTCAACCAGGTGGAAAGATCCCGGTTAAAGGAAAGAAGAGCATTGGAAGAGAAC CAAATCTTGCGCAAACAGGTAGAGATGTTGGGGAGAGTTTCATCAGGACCAAAAGGGCTGAGTGAAATACCTCAGTTTTCTAGCCC ACAAGCGGAGCCCGAGAGCTCTTCATCAGATGATGACGACGAGAATGACCTTCATTCCGACACTTCCTTGCAGCTGGGGTTGTCGT CATCGGGGTATGGTACAAAGAGAAAGAAGCCGAAGATTGAATCTCCATGTGGCTATAACTCTGGAAGTCAAGTTGCTTCTGATTTA TTAAATATCAATTTGTTAGTCTCCTAATTATGGTGTTTAGTAGAGGTTTTAAATGTGTATTCTCCTTGTTTCTCCAAGTAGAGATT GATTTTATGTGTTTAAGTTGATTTTATGTGTTTAAGTGAACCATTTTTTTCCTTTAAATCAAGAAGGATTTGAAT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_191298 protein agamous-like 18 [Arabidopsis thaliana]	969	1e-102
AAM65178 MADS transcription factor-like protein [Arabidopsis thaliana]	962	7e-102
NP_974450 protein agamous-like 18 [Arabidopsis thaliana]	681	3e-069
XP_002876415 hypothetical protein ARALYDRAFT_486183 [Arabidopsis lyrata subsp. lyrata]	667	1e-067
BAD93735 MADS transcription factor-like protein [Arabidopsis thaliana]	596	2e-059

Swiss-Prot top hits (Blast detail)	Score	e value
Q01540 Floral homeotic protein AGAMOUS	306	4e-027
P29385 Agamous-like MADS-box protein AGL5	302	1e-026
Q43585 Floral homeotic protein AGAMOUS	302	1e-026
P17839 Floral homeotic protein AGAMOUS	301	1e-026
Q40168 Floral homeotic protein AGAMOUS	301	1e-026

TrEMBL top hits (Blast detail)	Score	e value
Q9M2K8 MADS transcription factor-like protein	969	8e-103
Q8LAS6 MADS transcription factor-like protein	962	5e-102
Q3EAI4 At3g57390	681	2e-069
Q570M9 MADS transcription factor-like protein	596	1e-059
B9H9K4 Predicted protein	459	1e-043

Arabidopsis top hits (Blast detail)	Score	e value
AT3G57390.1 AGL18; transcription factor	969	4e-105
AT3G57390.2 AGL18; transcription factor	681	1e-071
AT2G14210.1 AGL44 (AGAMOUS-LIKE 44); DNA binding / transcription factor	335	1e-031
AT2G42830.2 SHP2 (SHATTERPROOF 2); protein binding / transcription factor	303	7e-028
AT2G42830.1 SHP2 (SHATTERPROOF 2); protein binding / transcription factor	302	9e-028

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	1			50%


7	1			50%

Unigene Members	Member information