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Information for unigene UN47990
| FASTA Sequence |
| Unigene ID: UN47990 | Length: 1134 |
SSR | | CTCGATAAATCTAATGAATTGGCCAATGCAAACAGATTGAAAATGAAAATACAATGTCAACAGCTTTTTTAACTTATTTCATAAAC
ATTCATCATCTTCACAAATGTGGATCATATTCTTTTCACTGTATAAATAATTAAGTATTTTAAAAATAGTGAAACCTCAAAAGCAA
AAAAAAAAAAAAAAATCTAGATTCTGTAAAATGGGAACTCGTGAAACCAGATAAAGAAACTTCACCGGCAGTCTTACGTCCCCCCG
GCGAGATATATATAATCATCTTCTTGCTCCCTTTCTTCTTCTTCTTCCCCGTATAGCCACCACAGTTCAATGATTGGTTCCAAAAC
TGAAAGACTTTGGAACAAAAATAAATTTTAAAAAAGTGGAAAAAACCTGTGTCTATGTCCTTGTCCTTGTTCATTCAAATTGATTG
TCGTTTGGCGAAAGGTTTTTGGCAAATGAAAAGTCTCTGTTCACTGCTGCTTTCAACCTCTATGACTCTAGCTTCCCATTTCAACT
GCGTTGTCAAAGCTCTAGCTGTTTCCACCAGCTGTGCCGTGTCACGGATTATCACCCATCCCTCTGGACGAAGTAATCTATCAATC
TCTGTGAATATTTGCATAAACGAGCATGAGCTCCGGAGCTTACTTGTCTGAAGAGTCAAAAGATTGTCTGCGTGGACCAGATCGTA
TGTTCTCGGGTAAGACGGGAAAGCTTCACACCAGTCGTGCAAAACTCCGACAAAGCCACGGTCGAGGATCATTGGGAGGTGGTTAG
GTCCAGCTGTAGGGACAACATTCATGACCCAAACCGATTTCTTGGCTTCCAACAAGGCGGAGTTGAGGCCACCGAATTGAGAATTC
ATGTCCAAAACGTTTCTGAGCATGTTATAAGGAGGTGATGGGTCTTCGTCGCCGGGTCTCTTGGGGTGATCAGAGAATATCAGAGG
AGACAAGAGAGACCAGTAGTCTCTTACGTTTACTTTCCAGTTTGCAGCATCTTCTCCAACCTCCTCCGGGTGAAGACCATATAGTG
AAAGTTCAGTCTTGTTCATGTTAGGCTAGGCCATCTTGTCCTGCCTTCAATGGGAACCCACCTCCGGCTACGTGTTCCACCAAGAC
ACATCTGAAGCGGCCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ABV89659 dehydration-responsive protein-related [Brassica rapa] | 1042 | 4e-111 |
| XP_002889181 hypothetical protein ARALYDRAFT_895718 [Arabidopsis lyrata subsp. lyrata] | 1017 | 4e-108 |
| NP_177948 putative pectin methyltransferase QUA2 [Arabidopsis thaliana] | 998 | 6e-106 |
| AAG52090 unknown protein, 5' partial; 69506-67937 [Arabidopsis thaliana] | 998 | 6e-106 |
| XP_002513934 S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] | 874 | 1e-091 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9C9Q8 Probable pectin methyltransferase QUA2 | 998 | 2e-107 |
| Q8GYW9 Probable methyltransferase PMT4 | 683 | 8e-071 |
| Q3EC77 Probable methyltransferase PMT5 | 654 | 2e-067 |
| Q9FG39 Probable methyltransferase PMT12 | 355 | 9e-033 |
| Q9C6S7 Probable methyltransferase PMT20 | 353 | 1e-032 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A8IXV9 Dehydration-responsive protein-related | 1042 | 3e-111 |
| B9RJL5 S-adenosylmethionine-dependent methyltransferase, putative | 874 | 9e-092 |
| B9H723 Predicted protein | 859 | 5e-090 |
| A2X9R4 Putative uncharacterized protein | 792 | 3e-082 |
| A3ABH3 Putative uncharacterized protein | 792 | 3e-082 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G78240.1 TSD2 (TUMOROUS SHOOT DEVELOPMENT 2); methyltransferase | 999 | 2e-108 |
| AT1G78240.2 TSD2 (TUMOROUS SHOOT DEVELOPMENT 2); methyltransferase | 999 | 2e-108 |
| AT2G03480.2 dehydration-responsive protein-related | 685 | 4e-072 |
| AT1G13860.2 dehydration-responsive protein-related | 683 | 7e-072 |
| AT1G13860.4 dehydration-responsive protein-related | 683 | 7e-072 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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