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Information for unigene UN48075

FASTA Sequence
Unigene ID: UN48075Length: 1404 SSR 
TGATTTTCATAGTCCTTTTTTTCTGTGTATTGATACTTTGAGAGAAATTCGAATGCTCTGTTTTGTTTTCTCCGGAAAGTTATATA
AGATCAGAGGAAGATGAGAGGCGGCGCGAGTGGAAACAACGTTTTGGAGACTATAAACGCAGCCGCTACTGCGTTCGCTTCCTCTG
ATGATCGTGTTCATCACCAACCTTCCCCGATTCATCAGAAGAAGCGAAGATGGTGGAATCGTTTCATATGTTTCAGACCTTCAACA
CAGAGAAAAAAACGAATCGGGAAAGCTGCTCTTGCTCCTGAACCGGTTCCTACCGATTCCACATCCAATTCCGGTTATCGTTCGGT
TATGACGGCTCTTCCTTTCATAGCCCCACCTTCTTCTCCAGCTTCCTTCTTCCAATCAGAACCTCCTTCCGCTACGCAATCGCCTG
TAGGGATCCTCTCCTTTAGTCCTCTACCTTCTAACAACCACAACAACAACAACAACAGCGAAGAGCGTCCTTCGATCTTCGCCATT
GGACCTTACGCTCACGAACCTCAGCTGGTTTCTCCTCCGGTTTTCTCTACTTACACAACCGAACCGTCTTCGGCTCCGGTCACGCC
GCCTCTCGACGAGTCTTTCTACTTAACCACCACCACACCTTCTTCGCCTGAAGTCCCTTTCGCTCAGCTCTTTAACTCCAGCAGTA
ACTACGGTGTCAGGTCTCCGGTGTCTAACTACGAGTTTCAGTTTTACCAACTTCCTCCCGGTAGTCCACTCGCTCAGCTTATCTCG
CCCAGCTCGGTTATGTCCGGTTCTGGTGCGACTTCTCCGTTTCCTGACGGAGTCGCTCAGTTTCAAGTTTCTGATCCACCAAAGCT
GCTGAGCCCTGGTAAACTGCGTTGCTCCAAGTCTGTTACAACTCCTAAAGAGCAGAACAAGATTGAGACCGAACAAACCGGTTTCG
TTCGATCTTGATGCGGATCATTTCATTAGATGCGTTGATAAGAAGTTGAGAACAACGTTCCCTGAAGCGTCTGATCAAGAAGCAGC
TCAACATTCCTCCTCCGGATCCAATAAAGAATTCGATTTCGGCACCACCGATGAGATACATTTGACCGGTGATGATGAGCATAGAG
ATTCGACCAAGAACAGCAGCGATTGGTCCTTCCCTGTGATGCAATCAGGCACACTTAGCTAACTTTCAAGGCTTCTCCTTAAGATC
TAGTAGTTATATATAATCTGAATTTAGAATCCCAAATTATGTTCAGGATCTTAGAGATTGTTTATTGTCTCTCTTTATTGGTTTTG
TAATAAATATTTGACGTTGTCAGTTGTTGTATATGGCTGTCTTTGTGTAGTTTTTTTTTTTTTAAAAATTTGTGCATATATATTTG
ATCGCATTTGTAAACATATTTTCCAGCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
CAZ40337 hypothetical protein [Raphanus sativus]11412e-122
CAZ44327 hypothetical protein [Raphanus sativus]11062e-118
ABJ98061 unknown [Eutrema halophilum]10283e-109
XP_002886388 hypothetical protein ARALYDRAFT_474978 [Arabidopsis lyrata subsp. lyrata]10069e-107
NP_564816 uncharacterized protein [Arabidopsis thaliana]9314e-098

Swiss-Prot top hits (Blast detail)Scoree value
Q9SRE5 Uncharacterized protein At1g766602449e-020
Q54MV3 Rho GTPase-activating protein gacJ1292e-006

TrEMBL top hits (Blast detail)Scoree value
C4WRH4 Putative uncharacterized protein11411e-122
D0R6K0 Putative uncharacterized protein l7rfog311062e-118
A0FIZ9 Putative uncharacterized protein10282e-109
Q93W23 At1g63720/F24D7_99313e-098
Q9CAD7 Putative uncharacterized protein F24D7.97315e-075

Arabidopsis top hits (Blast detail)Scoree value
AT1G63720.1 EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G52430.1); Has 406 Blast hits to 313 proteins in 78 species: Archae - 0; Bacteria - 2; Metazoa - 123; Fungi - 81; Plants - 111; Viruses - 14; Other Eukaryotes - 75 (source: NCBI BLink).9312e-100
AT5G52430.1 hydroxyproline-rich glycoprotein family protein5162e-052
AT4G25620.1 hydroxyproline-rich glycoprotein family protein2832e-025
AT1G76660.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G52430.1); Has 280 Blast hits to 160 proteins in 42 species: Archae - 0; Bacteria - 4; Metazoa - 55; Fungi - 17; Plants - 64; Viruses - 4; Other Eukaryotes - 136 (source: NCBI BLink).2448e-021

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
181  33%
 
121  33%
 
61  33%

Unigene MembersMember information