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Information for unigene UN48124
| FASTA Sequence |
| Unigene ID: UN48124 | Length: 1064 |
SSR | | AGGGTGAAAAGACTTAAATTAGACTGTTAAACAGAGAAGCATTCATTATGAAGAGACCACAAAATAGAGAGAACCCCGAATCAAAC
CAAAGCTAAGTAGTCAATGGCAGCACACAGACAGACGAGAACATGTTTTTCAATCATAACCTTTACTTAATATGTTACTAATAAAA
AGACCACTCGTGCATCCATTGCATAACAAACATAGGTGAAGAGCTTCGTACGGTCCAAAACAGCCATCCTCTCACAGAAAATGCGT
TTATGAGAATAGGAAGGGTGGTGATCAAAACTGGCGCCTTGGAGGCCTAGCCTCAGCTTCAGAGACTCTTATTTGTCTACCGTCCA
AATCGGCACCATTCAAGTTTCTGATGGCATTTTGGACCTCTTGAGCAGAGTTGTAGGTCACAAACCCAAAACCCTTAGATCGACCA
CTGTCCCTGTCGTAGATGACTCTAGCCTCAGATACCTTTCCCTGCTCCCCGAACAAACTCTCGAGAGCCATGTCATCGACTCCCCA
AGATAGGCTGCCGACGTAAACACGGTTTCCTGAACCAGCACCACCACCACCACCATCTAACTCATAGCCATTGAACTGCTGCTCAG
CTGCTTCAACTTCAGACACTGAAGACATAGTCACGAACCCGAAACCTCTGCTTCGTCCTGTCACTTTGTCATATATCACCTCAACC
ATCTCGACATTTCCGGCGCTCTCGAAGAGCTGAGCGAGCTGAGCACTGTCGACGTCGAAGGGGAGGTTACCGACGAAGAGTTTAAG
GTCAGCAGAGAAGGATTGCTCCTGCTGCGGAGGAGCGTCATCGGAGAAAACTCCATCTTCTTCTTCTACGCTGAAGTCATCTGTGA
CGGCAACATTACGGACGAAGCGAGACGCGGCGGAGACGGAGAGGGAAATGGATTGGGAGTTGAGTTTGAAGGAGAGGGAAGGAGGG
AGGAAGGGAGTGGAGGCGGGTCTGGAGATGGAGAAAGGAAGGGATTTAGGGTTGAAGGTGGAGAGAGCGAGAGACGAAGCTGAGGC
AGCCATGGAGGAAGAGATAGGGTTGAGAGTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002881497 hypothetical protein ARALYDRAFT_482714 [Arabidopsis lyrata subsp. lyrata] | 622 | 2e-062 |
| AAM66970 putative RNA-binding protein [Arabidopsis thaliana] | 614 | 2e-061 |
| NP_181259 ribonucleoprotein [Arabidopsis thaliana] | 610 | 5e-061 |
| XP_002519525 ribonucleoprotein, chloroplast, putative [Ricinus communis] | 430 | 4e-040 |
| BAA06518 RNA-binding protein cp29 [Arabidopsis thaliana] | 419 | 7e-039 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9ZUU4 Ribonucleoprotein At2g37220, chloroplastic | 610 | 2e-062 |
| Q43349 29 kDa ribonucleoprotein, chloroplastic | 419 | 3e-040 |
| Q08935 29 kDa ribonucleoprotein A, chloroplastic | 390 | 7e-037 |
| P49313 30 kDa ribonucleoprotein, chloroplastic | 375 | 4e-035 |
| Q08937 29 kDa ribonucleoprotein B, chloroplastic | 348 | 5e-032 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8L941 Putative RNA-binding protein | 614 | 1e-061 |
| Q7GA50 Putative RNA-binding protein | 610 | 3e-061 |
| B9S0K6 Ribonucleoprotein, chloroplast, putative | 430 | 3e-040 |
| B9IFN7 Predicted protein | 423 | 2e-039 |
| B9MTC6 Predicted protein | 402 | 4e-037 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G37220.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 610 | 2e-063 |
| AT3G53460.1 CP29; RNA binding / poly(U) binding | 420 | 2e-041 |
| AT3G53460.2 CP29; RNA binding / poly(U) binding | 420 | 2e-041 |
| AT4G24770.1 RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding | 265 | 2e-023 |
| AT5G50250.1 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative | 259 | 1e-022 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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